Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 0.0e+00 1157.5 634 100.0
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 4.8e-277 957.6 610 86.6
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.8e-128 462.6 562 44.7
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 4.8e-128 462.6 647 43.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 5.3e-127 459.1 643 42.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 1.6e-126 457.6 636 42.9
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.3e-125 454.5 652 41.6
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 2.2e-125 453.8 661 41.0
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 2.2e-125 453.8 569 44.3
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 1.1e-124 451.4 560 43.4
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.5e-124 451.1 561 44.9
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 2.5e-124 450.3 633 41.5
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.2e-124 449.9 579 44.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.2e-124 449.9 579 44.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.2e-124 449.9 578 45.5
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 4.2e-124 449.5 632 41.8
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.1e-123 447.2 579 45.1
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 2.7e-123 446.8 571 43.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 6.1e-123 445.7 639 41.9
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 1.0e-122 444.9 563 44.4
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.4e-122 444.5 636 42.1
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.8e-122 444.1 652 40.6
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 3.0e-122 443.4 643 41.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 5.2e-122 442.6 569 44.3
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 5.2e-122 442.6 639 41.6
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.2e-121 441.4 636 42.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 2.0e-121 440.7 634 41.5
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 2.6e-121 440.3 635 42.0
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 7.5e-121 438.7 572 44.9
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 2.8e-120 436.8 625 41.1
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 2.8e-120 436.8 625 41.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 4.8e-120 436.0 614 42.5
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 4.8e-120 436.0 632 41.8
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 8.3e-120 435.3 571 43.6
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.4e-119 434.5 663 39.2
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.4e-119 433.7 649 39.8
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.1e-119 433.3 639 41.3
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.1e-119 433.0 618 41.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 4.1e-119 433.0 646 40.1
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 9.1e-119 431.8 633 40.9
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 2.0e-118 430.6 649 39.3
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.7e-118 430.3 661 39.8
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 5.9e-118 429.1 652 40.5
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.0e-117 428.3 655 39.8
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.3e-117 427.9 618 40.8
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.3e-117 427.9 647 40.2
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.7e-117 427.6 636 41.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.2e-117 427.2 648 40.3
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.9e-117 426.8 643 42.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 2.9e-117 426.8 637 42.1
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.9e-117 426.8 618 40.8
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 6.5e-117 425.6 617 41.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.5e-117 425.2 617 41.5
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.1e-116 424.9 631 40.7
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.5e-116 424.5 637 41.6
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.2e-116 423.3 617 41.3
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.5e-116 422.5 639 40.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 5.5e-116 422.5 633 40.1
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 5.5e-116 422.5 653 41.3
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.2e-115 421.4 564 41.5
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.2e-115 421.4 570 41.4
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.7e-115 420.2 564 42.9
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 6.1e-115 419.1 617 42.5
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 6.1e-115 419.1 668 39.1
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.0e-114 418.3 651 41.0
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.0e-114 418.3 655 39.4
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 6.8e-114 415.6 557 42.4
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 8.8e-114 415.2 534 44.4
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.5e-113 414.5 636 39.2
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.5e-113 414.5 661 39.0
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.0e-113 414.1 633 40.6
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.6e-113 413.7 682 39.3
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.4e-113 412.9 525 44.0
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 5.7e-113 412.5 648 39.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 5.7e-113 412.5 631 40.4
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.8e-112 410.2 450 48.0
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.9e-112 409.5 672 38.5
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 6.3e-112 409.1 572 41.4
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.1e-111 406.8 576 42.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 5.4e-111 406.0 659 39.6
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.4e-111 406.0 641 39.0
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 3.3e-108 396.7 640 38.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.2e-108 396.4 625 39.0
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 7.2e-108 395.6 590 39.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 6.1e-107 392.5 638 38.4
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 6.1e-107 392.5 651 38.6
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.8e-106 391.0 563 40.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.5e-105 387.9 565 40.2
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 2.0e-105 387.5 631 37.6
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.7e-105 386.0 647 38.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.3e-104 384.8 633 38.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 3.7e-104 383.3 550 40.5
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 3.7e-104 383.3 555 39.3
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 4.9e-104 382.9 633 38.4
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 6.3e-104 382.5 617 40.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 8.3e-104 382.1 486 44.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 2.4e-103 380.6 636 37.7
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 7.0e-103 379.0 629 38.2
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.6e-102 377.9 517 41.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 3.5e-102 376.7 568 41.2
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 4.6e-102 376.3 612 38.4
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 4.6e-102 376.3 612 38.4
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.9e-102 375.9 491 42.8
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.8e-102 375.6 475 42.9
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.3e-101 374.0 619 38.4
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 3.9e-101 373.2 638 38.6
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 3.9e-101 373.2 647 37.6
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 5.0e-101 372.9 475 42.9
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 4.3e-100 369.8 488 42.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.3e-100 369.8 488 42.0
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 7.3e-100 369.0 646 36.8
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 9.5e-100 368.6 647 36.9
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.2e-99 368.2 528 40.5
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.4e-98 364.8 614 38.4
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 6.8e-98 362.5 605 37.4
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.9e-96 357.1 479 41.1
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 8.6e-93 345.5 529 40.1
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.5e-92 344.0 630 37.1
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 3.6e-91 340.1 582 37.5
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 5.2e-90 336.3 435 41.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 4.9e-88 329.7 491 39.3
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.6e-75 288.1 479 36.7
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.2e-73 282.0 420 38.8
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.4e-73 280.4 445 38.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.3e-72 278.5 587 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 2.9e-72 277.3 478 36.2
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-64 251.1 244 49.6
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.1e-59 234.6 645 32.1
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.0e-58 230.3 260 47.7
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 3.9e-53 213.8 345 36.5
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 4.9e-48 196.8 316 38.9
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 3.7e-43 180.6 220 44.1
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 4.3e-36 157.1 136 55.9
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.5e-28 132.1 271 32.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 6.3e-19 100.1 594 24.6
Os02g0690000 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 4.2e-15 87.4 69 69.6


User provided reference genes

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