Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 1.8e-110 402.5 193 100.0
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 2.7e-98 362.1 183 94.5
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 7.6e-93 344.0 183 89.1
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 6.0e-90 334.3 186 86.0
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 7.4e-64 247.7 189 61.9
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 1.4e-57 226.9 140 79.3
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 4.1e-54 215.3 114 90.4
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 1.5e-48 196.8 185 53.0
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.6e-48 196.1 185 51.9
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 5.7e-48 194.9 185 54.1
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 7.5e-48 194.5 185 54.1
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 1.3e-47 193.7 185 53.5
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.2e-47 193.0 185 52.4
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 2.8e-47 192.6 185 52.4
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 3.7e-47 192.2 180 54.4
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 3.7e-47 192.2 186 54.3
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 3.7e-47 192.2 185 51.9
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 3.7e-47 192.2 185 52.4
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 3.7e-47 192.2 185 52.4
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 3.7e-47 192.2 185 52.4
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 4.8e-47 191.8 184 51.1
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 6.3e-47 191.4 181 54.7
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 8.3e-47 191.0 189 50.8
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 2.4e-46 189.5 169 53.3
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 3.1e-46 189.1 186 52.2
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 3.1e-46 189.1 184 51.1
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 3.1e-46 189.1 184 50.0
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.1e-46 188.7 190 51.1
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.1e-46 188.7 190 51.1
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 4.1e-46 188.7 188 50.0
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 4.1e-46 188.7 188 50.0
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 5.3e-46 188.3 185 52.4
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 7.0e-46 188.0 186 51.1
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 7.0e-46 188.0 185 52.4
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 9.1e-46 187.6 185 51.9
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 1.2e-45 187.2 186 52.7
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.6e-45 186.8 174 53.4
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 1.6e-45 186.8 180 52.2
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 1.6e-45 186.8 174 53.4
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 1.6e-45 186.8 185 51.9
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 1.6e-45 186.8 174 53.4
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 1.6e-45 186.8 174 53.4
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 2.0e-45 186.4 174 54.0
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 2.7e-45 186.0 173 53.8
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 2.7e-45 186.0 185 52.4
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 3.5e-45 185.7 180 51.1
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 3.5e-45 185.7 184 52.2
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 3.5e-45 185.7 186 50.0
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 3.5e-45 185.7 180 52.8
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 3.5e-45 185.7 179 52.5
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 4.5e-45 185.3 183 50.8
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 5.9e-45 184.9 174 52.9
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 1.0e-44 184.1 186 50.0
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.7e-44 183.3 170 53.5
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 1.7e-44 183.3 191 49.2
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.7e-44 183.3 186 51.6
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 2.2e-44 183.0 185 50.8
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 6.5e-44 181.4 189 49.2
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 6.5e-44 181.4 185 51.4
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 8.5e-44 181.0 187 49.7
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 8.5e-44 181.0 174 52.3
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 8.5e-44 181.0 174 52.3
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 8.5e-44 181.0 174 52.3
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 8.5e-44 181.0 174 52.3
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 8.5e-44 181.0 185 50.8
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 8.5e-44 181.0 185 49.7
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 1.5e-43 180.3 185 50.3
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 1.5e-43 180.3 185 49.2
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 1.5e-43 180.3 185 50.8
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 1.9e-43 179.9 175 51.4
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 1.9e-43 179.9 174 51.7
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 4.2e-43 178.7 185 48.6
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 5.5e-43 178.3 185 48.6
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 1.2e-42 177.2 184 49.5
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.2e-42 177.2 184 49.5
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.2e-42 177.2 184 49.5
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.1e-42 176.4 184 48.9
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 2.7e-42 176.0 182 48.4
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 2.7e-42 176.0 184 48.4
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.6e-42 175.6 191 47.1
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.7e-42 175.3 186 48.4
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 6.1e-42 174.9 191 47.1
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 6.1e-42 174.9 189 48.7
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 6.1e-42 174.9 191 47.1
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 6.1e-42 174.9 191 47.1
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 1.0e-41 174.1 185 47.0
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 1.4e-41 173.7 187 48.1
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 1.4e-41 173.7 183 47.5
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 1.8e-41 173.3 189 47.1
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 1.8e-41 173.3 94 86.2
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 2.3e-41 172.9 170 51.8
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 2.3e-41 172.9 191 46.1
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 3.0e-41 172.6 185 47.0
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.0e-41 172.2 186 46.2
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 5.2e-41 171.8 90 93.3
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 6.8e-41 171.4 185 48.6
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 8.8e-41 171.0 187 45.5
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 2.0e-40 169.9 189 45.5
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 2.6e-40 169.5 200 45.5
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 2.8e-39 166.0 92 88.0
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 1.1e-38 164.1 185 43.2
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 1.6e-37 160.2 185 44.3
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 1.6e-37 160.2 185 42.7
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 5.0e-36 155.2 156 50.6
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 7.2e-35 151.4 115 60.0
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 7.2e-35 151.4 179 44.7
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 3.0e-33 146.0 75 90.7
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 2.6e-32 142.9 183 44.8
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 1.3e-28 130.6 138 49.3
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 4.4e-24 115.5 94 57.4
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 1.3e-20 104.0 94 48.9
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 5.0e-20 102.1 177 32.8
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 1.4e-17 94.0 104 47.1
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 1.8e-17 93.6 48 91.7
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 9.8e-16 87.8 185 35.1
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.4e-14 83.2 183 32.2
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 1.3e-12 77.4 121 40.5
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 1.1e-11 74.3 157 33.1
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 1.7e-07 60.5 60 43.3
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 3.2e-06 56.2 44 54.5


User provided reference genes

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