Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb267620 Zea mays HOM05D001188 ORTHO05D015292 2.9e-69 265.0 126 100.0
Os05g0102500 Oryza sativa ssp. japonica HOM05D001188 ORTHO05D001032 2.0e-41 172.6 106 76.4
Zm00001eb334130 Zea mays HOM05D001188 ORTHO05D001032 1.6e-30 136.3 103 71.8
MBI11_g43076_MAGBIO Magnolia biondii HOM05D001188 ORTHO05D015292 2.0e-17 92.8 102 52.0
PSO478G2914 Papaver somniferum HOM05D001188 ORTHO05D015292 1.6e-14 83.2 101 43.6
PSO017G4726 Papaver somniferum HOM05D001188 ORTHO05D015292 3.5e-14 82.0 101 43.6
CDE02G0657 Ceratophyllum demersum HOM05D030760 ORTHO05D015292 3.3e-12 75.5 96 44.8
HPP92_020115 Vanilla planifolia HOM05D030760 ORTHO05D015292 9.0e-10 67.4 93 39.8
CDE05G2322 Ceratophyllum demersum HOM05D001188 ORTHO05D015292 1.2e-09 67.0 89 39.3
DCAR_026733 Daucus carota HOM05D001188 ORTHO05D001032 1.2e-09 67.0 109 38.5
Cpa.g.sc1.35 Carica papaya HOM05D001188 ORTHO05D001032 5.8e-09 64.7 108 35.2
MD13G1041600 Malus domestica HOM05D001188 ORTHO05D001032 5.8e-09 64.7 106 35.8
HPP92_023125 Vanilla planifolia HOM05D001188 ORTHO05D001032 1.3e-08 63.5 92 37.0
Hund20797 Selenicereus undatus HOM05D001188 ORTHO05D001032 1.7e-08 63.2 109 36.7
GSVIVG01032957001 Vitis vinifera HOM05D030760 ORTHO05D015292 2.2e-08 62.8 104 39.4
arahy.Tifrunner.gnm1.ann1.JCH4FE Arachis hypogaea HOM05D001188 ORTHO05D001032 3.8e-08 62.0 123 35.8
arahy.Tifrunner.gnm1.ann1.YP19K2 Arachis hypogaea HOM05D001188 ORTHO05D001032 3.8e-08 62.0 123 35.8
Lj4g0018774 Lotus japonicus HOM05D001188 ORTHO05D001032 4.9e-08 61.6 87 40.2
MD16G1042400 Malus domestica HOM05D001188 ORTHO05D001032 6.4e-08 61.2 114 33.3
Ah.03g137620 Amaranthus hybridus HOM05D001188 ORTHO05D001032 8.4e-08 60.8 109 34.9
DCAR_030157 Daucus carota HOM05D001188 ORTHO05D001032 1.1e-07 60.5 116 37.1
Sopen04g002280 Solanum pennellii HOM05D001188 ORTHO05D001032 1.1e-07 60.5 107 36.4
TPR.G32492 Trifolium pratense HOM05D001188 ORTHO05D001032 1.1e-07 60.5 98 43.9
MD13G1041500 Malus domestica HOM05D001188 ORTHO05D001032 1.4e-07 60.1 114 35.1
ECA240G2122 Erigeron canadensis HOM05D001188 ORTHO05D001032 1.9e-07 59.7 102 35.3
TWI79G0396 Tripterygium wilfordii HOM05D001188 ORTHO05D001032 1.9e-07 59.7 104 38.5
HPP92_020124 Vanilla planifolia HOM05D030760 ORTHO05D015292 1.9e-07 59.7 93 36.6
PGR119G2082 Punica granatum HOM05D001188 ORTHO05D001032 2.4e-07 59.3 107 37.4
Solyc04g007220.4 Solanum lycopersicum HOM05D001188 ORTHO05D001032 2.4e-07 59.3 107 35.5
ClCG05G022670 Citrullus lanatus HOM05D001188 ORTHO05D001032 3.2e-07 58.9 101 35.6
Peaxi162Scf00382g00824 Petunia axillaris HOM05D001188 ORTHO05D001032 4.2e-07 58.5 107 33.6
unitig_22.g6556 Utricularia gibba HOM05D001188 ORTHO05D001032 5.5e-07 58.2 119 35.3
MSTRG.13534 Avicennia marina HOM05D001188 ORTHO05D001032 9.3e-07 57.4 113 34.5
ECA233G5311 Erigeron canadensis HOM05D001188 ORTHO05D001032 9.3e-07 57.4 115 36.5
Lalb_Chr21g0308911 Lupinus albus HOM05D001188 ORTHO05D001032 9.3e-07 57.4 115 33.9
AUR62002861 Chenopodium quinoa HOM05D001188 ORTHO05D001032 1.2e-06 57.0 110 34.5
Glyma.10G274000 Glycine max HOM05D001188 ORTHO05D001032 1.2e-06 57.0 125 34.4
MBI10_g16030_MAGBIO Magnolia biondii HOM05D001188 ORTHO05D001032 1.2e-06 57.0 106 32.1
TPR.G18798 Trifolium pratense HOM05D001188 ORTHO05D001032 1.2e-06 57.0 115 37.4
DCAR_007246 Daucus carota HOM05D001188 ORTHO05D001032 1.6e-06 56.6 104 33.7
FvH4_5g12120 Fragaria vesca HOM05D001188 ORTHO05D001032 1.6e-06 56.6 101 36.6
FAN08G0058 Fragaria x ananassa HOM05D001188 ORTHO05D001032 1.6e-06 56.6 101 36.6
FAN13G2404 Fragaria x ananassa HOM05D001188 ORTHO05D001032 1.6e-06 56.6 101 36.6
SalBow8G0834 Salvia bowleyana HOM05D001188 ORTHO05D001032 1.6e-06 56.6 108 34.3
Sed0012892 Sechium edule HOM05D001188 ORTHO05D001032 1.6e-06 56.6 104 35.6
VMungo0720G1100 Vigna mungo HOM05D001188 ORTHO05D001032 1.6e-06 56.6 124 34.7
Eucgr.G02318 Eucalyptus grandis HOM05D001188 ORTHO05D001032 2.1e-06 56.2 105 32.4
Hma1.2p1_0061F.1_g033860 Hydrangea macrophylla HOM05D001188 ORTHO05D001032 2.1e-06 56.2 106 32.1
MBI16_g35167_MAGBIO Magnolia biondii HOM05D001188 ORTHO05D001032 2.1e-06 56.2 104 36.5
Manes.06G067600 Manihot esculenta HOM05D001188 ORTHO05D001032 2.1e-06 56.2 107 34.6
Nitab4.5_0003373g0040 Nicotiana tabacum HOM05D001188 ORTHO05D001032 2.1e-06 56.2 108 35.2
Ah.16g101780 Amaranthus hybridus HOM05D001188 ORTHO05D001032 2.7e-06 55.8 117 31.6
Ca_25492_v3 Cicer arietinum L. HOM05D001188 ORTHO05D001032 2.7e-06 55.8 100 36.0
Gohir.A03G147000 Gossypium hirsutum HOM05D001188 ORTHO05D001032 2.7e-06 55.8 110 35.5
Phvul.007G027500 Phaseolus vulgaris HOM05D001188 ORTHO05D001032 2.7e-06 55.8 117 36.8
Rhsim12G0085100 Rhododendron simsii HOM05D001188 ORTHO05D001032 2.7e-06 55.8 107 36.4
SGA_v2.0_scaffold14G06868 Striga asiatica HOM05D001188 ORTHO05D001032 2.7e-06 55.8 121 30.6
CSS0010207 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 3.5e-06 55.5 106 31.1
CDE06G1178 Ceratophyllum demersum HOM05D001188 ORTHO05D001032 3.5e-06 55.5 117 33.3
COL.COLO4_24805 Corchorus olitorius HOM05D001188 ORTHO05D001032 3.5e-06 55.5 107 34.6
Duzib248G1403 Durio zibethinus HOM05D001188 ORTHO05D001032 3.5e-06 55.5 107 33.6
Duzib251G0580 Durio zibethinus HOM05D001188 ORTHO05D001032 3.5e-06 55.5 107 33.6
Gorai.005G190600 Gossypium raimondii HOM05D001188 ORTHO05D001032 4.6e-06 55.1 108 35.2
Medtr1g110760 Medicago truncatula HOM05D001188 ORTHO05D001032 4.6e-06 55.1 126 33.3
Prupe.1G311700 Prunus persica HOM05D001188 ORTHO05D001032 4.6e-06 55.1 114 32.5
CSS0009416 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 6.0e-06 54.7 107 32.7
AUR62008997 Chenopodium quinoa HOM05D001188 ORTHO05D001032 6.0e-06 54.7 105 34.3
Duzib268G1413 Durio zibethinus HOM05D001188 ORTHO05D001032 6.0e-06 54.7 114 35.1
FAN18G0048 Fragaria x ananassa HOM05D001188 ORTHO05D001032 6.0e-06 54.7 101 35.6
FAN18G3829 Fragaria x ananassa HOM05D001188 ORTHO05D001032 6.0e-06 54.7 101 35.6
Lalb_Chr02g0145951 Lupinus albus HOM05D001188 ORTHO05D001032 6.0e-06 54.7 119 33.6
Manes.14G102800 Manihot esculenta HOM05D001188 ORTHO05D001032 6.0e-06 54.7 107 32.7
Medtr6g084470 Medicago truncatula HOM05D001188 ORTHO05D001032 6.0e-06 54.7 101 36.6
Potri.010G124400 Populus trichocarpa HOM05D001188 ORTHO05D001032 6.0e-06 54.7 115 36.5
QL01p042313 Quercus lobata HOM05D001188 ORTHO05D001032 6.0e-06 54.7 107 34.6
Sed0005897 Sechium edule HOM05D001188 ORTHO05D001032 6.0e-06 54.7 95 35.8
arahy.Tifrunner.gnm1.ann1.61ZXLU Arachis hypogaea HOM05D001188 ORTHO05D001032 7.9e-06 54.3 82 40.2
CAN.G610.80 Capsicum annuum HOM05D001188 ORTHO05D001032 7.9e-06 54.3 104 33.7
Dinv31636 Davidia involucrata HOM05D001188 ORTHO05D001032 7.9e-06 54.3 110 32.7
Lalb_Chr06g0166041 Lupinus albus HOM05D001188 ORTHO05D001032 7.9e-06 54.3 116 33.6
Pp3c20_7460 Physcomitrium patens HOM05D001188 ORTHO05D001032 7.9e-06 54.3 91 33.0
Psat6g224960 Pisum sativum HOM05D001188 ORTHO05D001032 7.9e-06 54.3 119 35.3


User provided reference genes

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