Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 1.1e-33 146.0 71 100.0
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 3.1e-23 111.3 74 77.0
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.6e-22 108.2 69 79.7
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.4e-20 102.4 68 75.0
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 5.4e-20 100.5 62 80.6
Zm00001eb355980 Zea mays HOM05D007791 ORTHO05D000653 1.6e-16 89.0 71 66.2
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 8.1e-16 86.7 71 59.2
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 1.4e-15 85.9 61 67.2
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 9.2e-12 73.2 64 59.4
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 1.6e-11 72.4 64 57.8
Os01g0615100 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.1e-11 72.0 63 55.6
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.7e-11 71.6 61 57.4
COL.COLO4_05581 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.0e-10 68.2 67 50.7
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 3.0e-10 68.2 64 51.6
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.1e-10 67.4 74 50.0
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 6.6e-10 67.0 73 49.3
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 6.6e-10 67.0 64 51.6
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 6.6e-10 67.0 67 53.7
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 8.6e-10 66.6 70 51.4
Sed0001107 Sechium edule HOM05D001004 ORTHO05D000653 1.1e-09 66.2 69 50.7
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.1e-09 66.2 64 46.9
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.5e-09 65.9 74 50.0
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 1.9e-09 65.5 66 48.5
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 3.3e-09 64.7 64 53.1
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.3e-09 64.7 64 50.0
Os12g0548501 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 4.3e-09 64.3 54 64.8
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.3e-09 64.3 74 48.6
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.3e-09 64.3 74 48.6
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 7.3e-09 63.5 64 48.4
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 9.5e-09 63.2 64 53.1
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 9.5e-09 63.2 64 53.1
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.5e-09 63.2 71 47.9
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 9.5e-09 63.2 51 54.9
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 9.5e-09 63.2 70 50.0
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.2e-08 62.8 72 47.2
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 2.1e-08 62.0 71 52.1
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.1e-08 62.0 64 50.0
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 3.6e-08 61.2 70 45.7
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 3.6e-08 61.2 70 47.1
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 3.6e-08 61.2 64 46.9
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 4.7e-08 60.8 65 52.3
CsaV3_5G014630 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.2e-08 60.5 64 53.1
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 6.2e-08 60.5 70 47.1
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.2e-08 60.5 64 51.6
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 6.2e-08 60.5 65 49.2
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.2e-08 60.5 64 50.0
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 6.2e-08 60.5 64 45.3
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 8.1e-08 60.1 51 52.9
COL.COLO4_05580 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.1e-07 59.7 68 47.1
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 1.1e-07 59.7 71 46.5
Lalb_Chr21g0312251 Lupinus albus HOM05D001004 ORTHO05D000653 1.4e-07 59.3 64 51.6
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 1.8e-07 58.9 64 43.8
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.8e-07 58.9 64 46.9
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 2.4e-07 58.5 64 48.4
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 2.4e-07 58.5 74 45.9
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 2.4e-07 58.5 64 43.8
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 2.4e-07 58.5 64 48.4
ClCG06G013020 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.1e-07 58.2 65 46.2
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 3.1e-07 58.2 64 46.9
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 4.0e-07 57.8 65 49.2
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 4.0e-07 57.8 69 47.8
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 4.0e-07 57.8 74 41.9
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 5.2e-07 57.4 67 43.3
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 5.2e-07 57.4 62 46.8
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 50.0
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 6.8e-07 57.0 64 45.3
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.8e-07 57.0 71 43.7
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 6.8e-07 57.0 61 45.9
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 6.8e-07 57.0 64 45.3
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.9e-07 56.6 64 46.9
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.9e-07 56.6 71 43.7
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 8.9e-07 56.6 70 44.3
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 8.9e-07 56.6 67 44.8
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 8.9e-07 56.6 67 43.3
PSO339G6102 Papaver somniferum HOM05D001004 ORTHO05D000653 8.9e-07 56.6 56 46.4
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 8.9e-07 56.6 74 45.9
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 8.9e-07 56.6 67 43.3
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 8.9e-07 56.6 67 43.3
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 8.9e-07 56.6 68 44.1
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 1.2e-06 56.2 70 45.7
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.2e-06 56.2 66 45.5
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 1.5e-06 55.8 65 47.7
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 45.3
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 48.4
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 48.4
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 2.0e-06 55.5 67 44.8
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.0e-06 55.5 64 46.9
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.0e-06 55.5 64 46.9
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 45.3
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 2.0e-06 55.5 70 44.3
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 2.0e-06 55.5 72 43.1
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 46.9
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 42.2
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 2.6e-06 55.1 64 46.9
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.6e-06 55.1 63 44.4
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 3.4e-06 54.7 73 42.5
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 46.9
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 48.4
Sed0002681 Sechium edule HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 45.3
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 3.4e-06 54.7 65 43.1
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 48.4
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 4.4e-06 54.3 63 46.0
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 4.4e-06 54.3 73 39.7
ECA238G0152 Erigeron canadensis HOM05D001004 ORTHO05D000653 4.4e-06 54.3 68 47.1
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 4.4e-06 54.3 64 43.8
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 4.4e-06 54.3 70 45.7
Sabra11G0097900 Salix brachista HOM05D001004 ORTHO05D000653 4.4e-06 54.3 67 41.8
Sabra11G0098000 Salix brachista HOM05D001004 ORTHO05D000653 4.4e-06 54.3 67 41.8
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 4.4e-06 54.3 70 42.9
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.8e-06 53.9 73 42.5
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 50.0
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 50.0
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 5.8e-06 53.9 64 46.9
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 5.8e-06 53.9 70 42.9
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 43.8
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 5.8e-06 53.9 70 44.3
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 5.8e-06 53.9 64 42.2
FvH4_4g02870 Fragaria vesca HOM05D001004 ORTHO05D000653 7.6e-06 53.5 69 42.0
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.6e-06 53.5 71 43.7
Gohir.D11G134150 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.6e-06 53.5 67 43.3
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 7.6e-06 53.5 73 42.5
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 7.6e-06 53.5 72 41.7
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 7.6e-06 53.5 64 46.9
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 45.3
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 42.2
COL.COLO4_05582 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.9e-06 53.1 51 47.1
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 9.9e-06 53.1 67 47.8
FAN12G4135 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.9e-06 53.1 68 41.2
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 9.9e-06 53.1 70 44.3
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 9.9e-06 53.1 70 44.3
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 45.3
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 48.4


User provided reference genes

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