Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.9e-67 258.5 131 100.0
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.1e-50 203.4 125 79.2
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.9e-42 176.0 131 67.2
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.2e-42 174.9 131 67.2
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 5.4e-42 174.5 131 67.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.4e-42 174.5 131 67.2
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 5.4e-42 174.5 129 68.2
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 7.1e-42 174.1 122 69.7
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-41 173.3 124 68.5
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.6e-41 172.9 131 67.2
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.6e-41 172.9 129 66.7
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 4.6e-41 171.4 131 64.9
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 4.6e-41 171.4 123 68.3
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 6.0e-41 171.0 132 66.7
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 6.0e-41 171.0 120 68.3
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 6.0e-41 171.0 131 64.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 7.8e-41 170.6 121 70.2
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 63.4
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 63.4
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 63.4
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 1.0e-40 170.2 123 68.3
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.0e-40 170.2 117 70.1
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.3e-40 169.9 129 66.7
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.3e-40 169.9 122 68.0
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.3e-40 169.9 118 69.5
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.3e-40 169.1 131 64.1
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 2.3e-40 169.1 122 67.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.3e-40 169.1 131 64.9
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.3e-40 169.1 111 72.1
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 2.3e-40 169.1 129 65.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 3.0e-40 168.7 120 66.7
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.0e-40 168.7 131 64.1
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.0e-40 168.7 131 64.9
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 3.0e-40 168.7 131 64.9
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 3.9e-40 168.3 128 66.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 3.9e-40 168.3 118 68.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 3.9e-40 168.3 123 66.7
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.9e-40 168.3 130 64.6
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.1e-40 167.9 123 65.9
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 5.1e-40 167.9 131 62.6
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-40 167.9 130 65.4
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-40 167.9 130 65.4
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-40 167.9 130 65.4
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 6.6e-40 167.5 131 63.4
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 6.6e-40 167.5 129 62.8
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 6.6e-40 167.5 129 62.8
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 6.6e-40 167.5 123 65.9
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 8.7e-40 167.2 131 63.4
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.7e-40 167.2 126 65.9
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 8.7e-40 167.2 111 68.5
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 8.7e-40 167.2 131 64.9
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 8.7e-40 167.2 131 62.6
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.1e-39 166.8 121 64.5
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.1e-39 166.8 118 66.1
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.5e-39 166.4 132 63.6
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.5e-39 166.4 111 68.5
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.9e-39 166.0 131 63.4
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.9e-39 166.0 121 65.3
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.5e-39 165.6 131 61.8
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.5e-39 165.6 118 66.9
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.5e-39 165.6 118 68.6
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 3.3e-39 165.2 131 62.6
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.3e-39 165.2 111 69.4
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 3.3e-39 165.2 118 66.1
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.3e-39 165.2 118 67.8
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.3e-39 164.9 130 63.8
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.3e-39 164.9 129 65.1
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.3e-39 164.9 130 65.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.3e-39 164.9 129 62.8
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 4.3e-39 164.9 131 64.9
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 5.6e-39 164.5 118 66.1
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 5.6e-39 164.5 110 70.0
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 5.6e-39 164.5 110 70.0
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 7.3e-39 164.1 111 66.7
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 7.3e-39 164.1 129 63.6
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 7.3e-39 164.1 128 64.8
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 7.3e-39 164.1 131 61.1
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 9.6e-39 163.7 129 65.1
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 9.6e-39 163.7 129 65.1
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-38 163.3 131 61.8
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.3e-38 163.3 111 68.5
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.3e-38 163.3 131 61.8
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.3e-38 163.3 131 62.6
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 1.3e-38 163.3 131 61.1
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.6e-38 162.9 111 66.7
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.6e-38 162.9 129 62.8
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.6e-38 162.9 125 64.8
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.6e-38 162.9 111 68.5
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.6e-38 162.9 131 61.8
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 2.1e-38 162.5 129 64.3
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.1e-38 162.5 129 63.6
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.8e-38 162.2 131 61.8
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.8e-38 162.2 130 65.4
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 2.8e-38 162.2 120 68.3
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.6e-38 161.8 131 62.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 3.6e-38 161.8 131 61.1
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.6e-38 161.8 131 61.8
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.6e-38 161.8 118 64.4
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 3.6e-38 161.8 122 65.6
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.6e-38 161.8 132 61.4
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.8e-38 161.4 111 70.3
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 6.2e-38 161.0 126 64.3
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 8.1e-38 160.6 118 66.1
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.1e-37 160.2 131 58.8
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.4e-37 159.1 129 60.5
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.4e-37 159.1 129 62.0
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.1e-37 158.7 129 59.7
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 5.3e-37 157.9 124 61.3
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 5.3e-37 157.9 110 66.4
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 5.3e-37 157.9 118 63.6
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 5.3e-37 157.9 131 61.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.3e-37 157.9 122 63.1
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 9.0e-37 157.1 128 59.4
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 9.0e-37 157.1 129 59.7
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 9.0e-37 157.1 145 56.6
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 9.0e-37 157.1 118 66.1
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-36 156.8 129 59.7
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-36 156.8 129 58.9
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.2e-36 156.8 129 58.9
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-36 156.4 122 60.7
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.5e-36 156.4 129 58.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.0e-36 156.0 129 58.9
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.0e-36 156.0 130 57.7
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.6e-36 155.6 129 57.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 2.6e-36 155.6 122 59.8
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.6e-36 155.6 122 61.5
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.4e-36 155.2 129 58.1
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 4.4e-36 154.8 110 63.6
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 5.8e-36 154.5 122 59.8
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 5.8e-36 154.5 122 59.8
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 5.8e-36 154.5 122 59.8
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.8e-36 154.5 119 63.9
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 3.8e-35 151.8 111 62.2
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 3.8e-35 151.8 129 55.0
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 6.4e-35 151.0 131 55.7
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.4e-34 147.9 105 66.7
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 7.1e-34 147.5 102 65.7
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 7.1e-34 147.5 123 60.2
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 9.3e-34 147.1 107 62.6
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.6e-33 146.4 115 62.6
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 3.5e-33 145.2 139 57.6
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.5e-33 145.2 107 63.6
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.6e-33 144.8 118 60.2
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 6.0e-33 144.4 91 73.6
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 6.0e-33 144.4 111 63.1
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-32 143.7 128 59.4
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.1e-31 140.2 123 58.5
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 4.8e-30 134.8 135 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 4.0e-29 131.7 123 54.5
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 3.4e-28 128.6 78 76.9
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.1e-24 114.8 86 65.1
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 8.7e-24 114.0 91 56.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 4.2e-18 95.1 56 82.1
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.3e-16 89.4 60 71.7
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 5.7e-15 84.7 78 52.6
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.6e-14 83.2 75 56.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.1e-13 79.0 75 53.3
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.9e-13 77.8 73 52.1
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.4e-12 75.5 76 50.0
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.9e-11 72.4 80 47.5
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.1e-10 70.5 50 62.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 3.5e-09 65.5 96 37.5
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.3e-07 58.5 42 59.5


User provided reference genes

Program Settings