Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 1.2e-25 119.0 60 100.0
Os05g0118800 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 4.3e-18 94.0 55 80.0
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.7e-11 72.0 49 65.3
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 6.6e-11 70.1 49 65.3
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 6.6e-11 70.1 49 61.2
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 1.1e-10 69.3 49 63.3
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 1.1e-10 69.3 49 63.3
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 1.1e-10 69.3 57 52.6
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 1.5e-10 68.9 49 65.3
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 65.3
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 65.3
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 65.3
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 65.3
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 63.3
Os07g0239500 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 1.9e-10 68.6 49 55.1
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.5e-10 68.2 60 58.3
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.5e-10 68.2 60 58.3
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 2.5e-10 68.2 60 58.3
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 3.3e-10 67.8 49 63.3
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 3.3e-10 67.8 49 63.3
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 4.3e-10 67.4 57 52.6
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 4.3e-10 67.4 58 53.4
Zm00001eb094930 Zea mays HOM05D003385 ORTHO05D003844 5.6e-10 67.0 60 53.3
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 7.3e-10 66.6 58 58.6
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 7.3e-10 66.6 49 63.3
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 9.5e-10 66.2 60 56.7
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.6e-09 65.5 49 61.2
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.6e-09 65.5 59 54.2
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 1.6e-09 65.5 49 61.2
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.6e-09 65.5 57 52.6
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.6e-09 65.5 59 52.5
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 1.6e-09 65.5 60 55.0
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 2.1e-09 65.1 53 56.6
Zm00001eb303930 Zea mays HOM05D003385 ORTHO05D003844 2.1e-09 65.1 47 57.4
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.8e-09 64.7 59 54.2
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.8e-09 64.7 60 51.7
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.8e-09 64.7 60 51.7
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 2.8e-09 64.7 60 51.7
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 2.8e-09 64.7 60 56.7
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 3.6e-09 64.3 57 50.9
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 4.7e-09 63.9 60 56.7
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 4.7e-09 63.9 49 59.2
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 4.7e-09 63.9 57 54.4
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 4.7e-09 63.9 57 49.1
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 4.7e-09 63.9 58 50.0
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 4.7e-09 63.9 58 53.4
Solyc08g078790.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 4.7e-09 63.9 49 61.2
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 4.7e-09 63.9 60 51.7
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 6.2e-09 63.5 59 52.5
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 6.2e-09 63.5 57 50.9
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 6.2e-09 63.5 57 50.9
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 6.2e-09 63.5 57 50.9
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 6.2e-09 63.5 58 53.4
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 8.1e-09 63.2 53 56.6
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 8.1e-09 63.2 57 49.1
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 8.1e-09 63.2 59 52.5
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 8.1e-09 63.2 46 60.9
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 8.1e-09 63.2 57 52.6
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 1.1e-08 62.8 60 53.3
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 1.4e-08 62.4 59 50.8
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 1.4e-08 62.4 53 56.6
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.4e-08 62.4 59 49.2
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 1.4e-08 62.4 60 48.3
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 1.4e-08 62.4 57 52.6
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 1.8e-08 62.0 53 54.7
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 1.8e-08 62.0 53 54.7
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 1.8e-08 62.0 53 54.7
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 1.8e-08 62.0 58 48.3
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 2.3e-08 61.6 60 56.7
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.1e-08 61.2 46 56.5
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.1e-08 61.2 46 56.5
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 3.1e-08 61.2 59 50.8
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 3.1e-08 61.2 59 49.2
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 3.1e-08 61.2 59 50.8
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 4.0e-08 60.8 55 50.9
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 4.0e-08 60.8 58 50.0
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 4.0e-08 60.8 58 46.6
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 4.0e-08 60.8 59 49.2
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 5.2e-08 60.5 57 52.6
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 6.8e-08 60.1 58 46.6
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 6.8e-08 60.1 57 47.4
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 6.8e-08 60.1 58 44.8
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 6.8e-08 60.1 58 44.8
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 1.2e-07 59.3 60 51.7
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 1.2e-07 59.3 49 55.1
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.2e-07 59.3 58 46.6
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 1.2e-07 59.3 57 47.4
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 1.2e-07 59.3 49 55.1
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 1.2e-07 59.3 57 47.4
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.2e-07 59.3 59 50.8
A04p27190 Brassica napus HOM05D003385 ORTHO05D003844 1.5e-07 58.9 49 53.1
BraA04t18217Z Brassica rapa HOM05D003385 ORTHO05D003844 1.5e-07 58.9 49 53.1
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 1.5e-07 58.9 59 47.5
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 1.5e-07 58.9 59 47.5
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 1.5e-07 58.9 58 46.6
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 1.5e-07 58.9 58 46.6
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 1.5e-07 58.9 58 46.6
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 1.5e-07 58.9 60 50.0
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.5e-07 58.9 49 53.1
BcaC02g07674 Brassica carinata HOM05D003385 ORTHO05D003844 2.0e-07 58.5 49 53.1
C04p64700 Brassica napus HOM05D003385 ORTHO05D003844 2.0e-07 58.5 49 53.1
BolC4t27948H Brassica oleracea HOM05D003385 ORTHO05D003844 2.0e-07 58.5 49 53.1
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 2.0e-07 58.5 49 53.1
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 2.0e-07 58.5 59 47.5
DCAR_024764 Daucus carota HOM05D003385 ORTHO05D003844 2.0e-07 58.5 55 47.3
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 2.0e-07 58.5 57 49.1
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 2.0e-07 58.5 59 49.2
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 2.6e-07 58.2 49 51.0
FAN25G0283 Fragaria x ananassa HOM05D003385 ORTHO05D003844 2.6e-07 58.2 59 47.5
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 2.6e-07 58.2 59 50.8
Medtr5g012410 Medicago truncatula HOM05D003385 ORTHO05D003844 2.6e-07 58.2 58 48.3
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 2.6e-07 58.2 60 51.7
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 3.4e-07 57.8 59 49.2
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 3.4e-07 57.8 58 48.3
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 4.4e-07 57.4 49 51.0
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 4.4e-07 57.4 59 49.2
Cc02_g24340 Coffea canephora HOM05D003385 ORTHO05D003844 4.4e-07 57.4 49 51.0
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 4.4e-07 57.4 58 43.1
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 4.4e-07 57.4 55 41.8
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 5.8e-07 57.0 57 45.6
Carub.0007s2496 Capsella rubella HOM05D003385 ORTHO05D003844 5.8e-07 57.0 52 48.1
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 5.8e-07 57.0 59 45.8
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 5.8e-07 57.0 57 47.4
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 5.8e-07 57.0 58 46.6
Gohir.D11G083700 Gossypium hirsutum HOM05D003385 ORTHO05D003844 5.8e-07 57.0 59 45.8
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 5.8e-07 57.0 59 45.8
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 5.8e-07 57.0 59 50.8
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 7.6e-07 56.6 49 53.1
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 7.6e-07 56.6 49 51.0
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.6e-07 56.6 45 53.3
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.6e-07 56.6 57 47.4
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 7.6e-07 56.6 57 47.4
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 7.6e-07 56.6 60 50.0
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 7.6e-07 56.6 49 49.0
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 7.6e-07 56.6 57 45.6
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 7.6e-07 56.6 45 55.6
HanXRQChr02g0049331 Helianthus annuus HOM05D003385 ORTHO05D003844 9.9e-07 56.2 58 41.4
Lj2g0011318 Lotus japonicus HOM05D003385 ORTHO05D003844 9.9e-07 56.2 59 42.4
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 9.9e-07 56.2 49 51.0
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 1.3e-06 55.8 49 53.1
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.3e-06 55.8 57 47.4
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 1.3e-06 55.8 49 46.9
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 1.3e-06 55.8 49 46.9
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.3e-06 55.8 58 41.4
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 1.7e-06 55.5 58 46.6
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.7e-06 55.5 55 40.0
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 2.2e-06 55.1 59 45.8
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 2.2e-06 55.1 59 45.8
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.2e-06 55.1 59 44.1
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 2.2e-06 55.1 53 52.8
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 2.9e-06 54.7 49 51.0
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 2.9e-06 54.7 48 45.8
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 2.9e-06 54.7 58 44.8
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 2.9e-06 54.7 59 42.4
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 3.7e-06 54.3 59 50.8
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 3.7e-06 54.3 57 45.6
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 3.7e-06 54.3 60 50.0
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 3.7e-06 54.3 59 47.5
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 4.9e-06 53.9 49 46.9
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 6.4e-06 53.5 48 43.8
Cc02_g24330 Coffea canephora HOM05D003385 ORTHO05D003844 6.4e-06 53.5 49 51.0
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 6.4e-06 53.5 50 48.0
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 6.4e-06 53.5 59 44.1
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 8.4e-06 53.1 50 46.0
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 8.4e-06 53.1 57 40.4


User provided reference genes

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