Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 4.4e-172 607.8 300 100.0
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.9e-127 459.5 276 78.3
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 3.3e-127 458.8 283 76.7
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 4.3e-127 458.4 271 80.4
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 5.6e-127 458.0 279 78.5
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 5.6e-127 458.0 285 77.5
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 7.3e-127 457.6 286 77.3
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 9.6e-127 457.2 276 79.3
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.1e-126 456.1 289 77.9
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.1e-126 456.1 289 77.9
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 2.8e-126 455.7 271 80.4
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 3.6e-126 455.3 280 78.6
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 3.6e-126 455.3 271 80.4
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 6.2e-126 454.5 271 80.1
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 6.2e-126 454.5 291 76.6
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 8.1e-126 454.1 284 77.8
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 8.1e-126 454.1 271 79.7
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 1.1e-125 453.8 279 78.9
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.4e-125 453.4 279 78.1
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.8e-125 453.0 271 80.8
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.8e-125 453.0 271 79.3
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 1.8e-125 453.0 271 79.0
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.4e-125 452.6 279 78.5
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 2.4e-125 452.6 279 78.5
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 3.1e-125 452.2 271 80.1
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 3.1e-125 452.2 271 79.3
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 4.0e-125 451.8 277 78.0
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 4.0e-125 451.8 275 78.2
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 4.0e-125 451.8 279 77.4
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 5.3e-125 451.4 275 77.8
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.9e-125 451.1 275 77.5
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 9.0e-125 450.7 282 77.3
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 9.0e-125 450.7 271 78.2
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.2e-124 450.3 271 79.0
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.5e-124 449.9 265 81.5
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 2.0e-124 449.5 279 78.9
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-124 449.1 276 78.6
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 2.6e-124 449.1 279 78.5
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 3.4e-124 448.7 288 75.0
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.5e-124 448.4 282 77.0
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 4.5e-124 448.4 300 73.7
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 4.5e-124 448.4 279 77.8
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 4.5e-124 448.4 279 76.0
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 5.8e-124 448.0 285 76.1
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 7.6e-124 447.6 279 77.8
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 9.9e-124 447.2 276 79.0
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 2.2e-123 446.0 287 74.9
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.2e-123 446.0 279 77.8
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 2.2e-123 446.0 284 74.6
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 2.2e-123 446.0 293 72.7
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 2.2e-123 446.0 301 74.1
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 2.9e-123 445.7 279 76.7
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 4.9e-123 444.9 277 78.0
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 4.9e-123 444.9 285 75.1
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 6.4e-123 444.5 279 77.4
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 6.4e-123 444.5 279 77.4
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 8.4e-123 444.1 278 78.1
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 1.1e-122 443.7 271 76.0
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 3.2e-122 442.2 284 75.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.2e-122 442.2 292 74.3
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 4.2e-122 441.8 284 76.4
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 4.2e-122 441.8 301 72.1
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 7.1e-122 441.0 283 76.3
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 7.1e-122 441.0 287 75.3
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 9.3e-122 440.7 312 71.5
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.6e-121 439.9 289 74.7
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 2.1e-121 439.5 314 70.1
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 2.1e-121 439.5 287 75.3
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 2.7e-121 439.1 271 75.6
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.8e-120 436.4 271 74.9
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.9e-120 435.3 269 75.8
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 5.1e-120 434.9 271 73.8
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 6.7e-120 434.5 271 73.8
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 8.7e-120 434.1 284 73.6
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 2.5e-119 432.6 279 76.0
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 4.3e-119 431.8 281 75.8
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 4.3e-119 431.8 276 74.6
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.1e-118 429.5 271 74.5
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.1e-118 429.5 271 74.5
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 2.1e-118 429.5 280 75.4
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.1e-117 427.2 256 78.9
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.1e-117 427.2 271 74.5
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 2.4e-117 426.0 279 72.8
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 6.9e-117 424.5 280 72.9
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 6.9e-117 424.5 280 72.9
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 9.0e-117 424.1 272 73.9
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.6e-116 422.5 272 73.5
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.5e-116 421.8 279 71.3
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 5.8e-116 421.4 278 72.7
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.7e-115 419.9 325 66.5
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 4.9e-115 418.3 271 74.9
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.4e-114 416.8 271 74.5
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-113 413.7 269 74.7
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.2e-113 413.7 260 77.3
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 1.2e-113 413.7 271 75.3
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.0e-112 410.6 272 71.7
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 5.1e-112 408.3 279 69.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.9e-111 406.4 276 69.9
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 4.3e-111 405.2 303 68.3
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.6e-110 403.3 311 64.0
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 3.4e-108 395.6 268 69.0
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 3.4e-108 395.6 242 78.5
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 2.9e-107 392.5 277 71.1
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.8e-104 383.3 269 70.3
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.1e-103 380.6 238 76.5
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.8e-102 375.9 307 60.9
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.0e-100 369.8 366 55.5
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.7e-99 366.7 211 82.0
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.0e-96 357.5 272 65.1
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.0e-96 357.5 217 79.7
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.3e-94 350.5 273 60.1
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.7e-94 350.1 277 61.4
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 8.2e-94 347.8 289 64.0
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.4e-93 347.1 210 79.5
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 7.7e-92 341.3 274 61.3
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.5e-91 338.2 197 81.7
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 8.8e-88 327.8 199 79.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.5e-82 309.7 226 69.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 1.0e-80 304.3 189 76.7
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 1.0e-80 304.3 189 76.7
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 9.1e-77 291.2 228 61.4
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.2e-75 286.6 226 65.9
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.5e-74 283.9 263 54.4
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.5e-66 257.3 155 80.6
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 6.8e-64 248.4 184 63.0
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 3.8e-59 232.6 151 71.5
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 6.6e-59 231.9 200 55.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 5.6e-58 228.8 301 46.2
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.7e-54 216.1 281 44.8
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 5.9e-52 208.8 131 77.1
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 7.3e-42 175.3 104 83.7
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.8e-40 170.6 228 43.0
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 3.4e-39 166.4 210 42.9
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 8.3e-38 161.8 110 70.9
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.0e-35 154.8 272 36.8
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.5e-26 124.4 107 57.0
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 6.4e-14 82.4 67 56.7
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 4.3e-10 69.7 45 68.9
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 5.6e-10 69.3 48 64.6


User provided reference genes

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