Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 3.1e-99 365.2 186 100.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.0e-65 251.5 157 82.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.8e-54 214.2 157 70.7
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.2e-52 209.5 156 69.9
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.2e-52 209.5 156 68.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 6.3e-52 208.0 174 63.2
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.4e-51 206.8 149 69.1
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.4e-51 206.8 195 59.0
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.4e-51 206.8 152 69.1
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.4e-51 206.1 165 65.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 4.1e-51 205.3 171 62.6
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 5.3e-51 204.9 151 70.2
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.3e-51 204.9 173 64.7
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 5.3e-51 204.9 151 69.5
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 7.0e-51 204.5 153 67.3
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 7.0e-51 204.5 180 61.1
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.1e-51 204.1 159 64.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.2e-50 203.8 193 60.6
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.2e-50 203.8 176 61.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.2e-50 203.8 153 67.3
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.5e-50 203.4 156 66.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.5e-50 203.4 141 70.9
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.0e-50 203.0 153 66.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.0e-50 203.0 152 67.8
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.6e-50 202.6 165 63.0
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.6e-50 202.6 161 65.8
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.5e-50 202.2 153 66.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.5e-50 202.2 153 66.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 3.5e-50 202.2 171 62.0
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.5e-50 201.8 151 67.5
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 4.5e-50 201.8 136 73.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 5.9e-50 201.4 152 67.1
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 7.7e-50 201.1 153 66.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.7e-50 201.1 152 67.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 7.7e-50 201.1 179 60.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 7.7e-50 201.1 167 64.1
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-49 200.7 180 62.8
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.3e-49 200.3 139 72.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.3e-49 200.3 168 63.1
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.7e-49 199.9 166 62.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.2e-49 199.5 159 65.4
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.9e-49 199.1 174 60.9
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.9e-49 199.1 141 69.5
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 5.0e-49 198.4 198 56.1
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.0e-49 198.4 198 56.6
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.0e-49 198.4 141 70.2
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 6.5e-49 198.0 162 62.3
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 6.5e-49 198.0 168 60.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 8.5e-49 197.6 162 63.6
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.1e-48 197.2 159 63.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.2e-48 195.7 170 61.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 4.2e-48 195.3 160 63.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 4.2e-48 195.3 173 58.4
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.2e-48 195.3 195 55.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 5.5e-48 194.9 177 59.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.1e-47 193.0 150 66.7
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.1e-47 193.0 165 61.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.7e-47 192.6 141 67.4
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.0e-46 190.7 163 61.3
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.3e-46 189.5 143 63.6
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.3e-46 189.5 140 68.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 6.7e-46 188.0 161 57.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.5e-45 186.8 183 56.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.6e-45 186.0 175 56.6
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.3e-45 185.7 114 80.7
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.4e-45 184.5 188 53.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.8e-44 182.6 114 77.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-44 182.2 113 78.8
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 6.3e-44 181.4 154 59.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 6.3e-44 181.4 113 77.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-43 180.6 114 76.3
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.8e-43 179.9 158 57.6
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.4e-43 179.5 158 58.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.1e-43 179.1 123 70.7
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 3.1e-43 179.1 112 78.6
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.1e-43 178.7 115 75.7
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 7.0e-43 177.9 112 75.9
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.0e-43 177.9 119 71.4
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 7.0e-43 177.9 113 77.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.2e-42 177.2 139 66.2
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.2e-42 177.2 176 56.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.0e-42 176.4 112 76.8
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.6e-42 176.0 113 76.1
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.6e-42 176.0 138 63.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.5e-42 175.6 153 60.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 5.9e-42 174.9 122 70.5
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 7.7e-42 174.5 112 76.8
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 7.7e-42 174.5 141 63.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.7e-41 173.3 114 75.4
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.2e-41 172.9 135 65.2
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 8.5e-41 171.0 200 49.0
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 8.5e-41 171.0 154 57.8
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.2e-40 169.1 109 75.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 5.5e-40 168.3 142 63.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 7.2e-40 167.9 152 57.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 7.2e-40 167.9 156 57.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 9.4e-40 167.5 123 66.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 9.4e-40 167.5 112 71.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 9.4e-40 167.5 138 61.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 9.4e-40 167.5 198 50.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.2e-39 167.2 147 56.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.6e-39 165.6 152 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 6.1e-39 164.9 159 54.7
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 8.0e-39 164.5 174 52.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.4e-38 163.7 149 57.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-38 163.7 165 53.9
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.3e-38 162.9 165 52.1
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.0e-38 162.2 155 54.8
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 8.8e-38 161.0 133 59.4
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.6e-37 159.5 109 67.9
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.6e-37 159.5 172 51.2
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 7.5e-37 157.9 117 65.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.2e-36 156.4 134 60.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.2e-34 150.6 154 52.6
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 4.5e-34 148.7 112 64.3
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 5.9e-34 148.3 162 53.1
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.8e-33 145.6 98 73.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.8e-33 145.6 190 45.8
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.1e-32 144.1 164 49.4
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 4.2e-32 142.1 151 54.3
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 5.5e-32 141.7 155 48.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 2.1e-31 139.8 123 62.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.7e-31 139.4 170 45.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.7e-31 138.7 160 55.0
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.8e-30 136.7 76 84.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 5.2e-30 135.2 151 49.7
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 8.8e-30 134.4 175 46.9
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.0e-29 133.3 110 57.3
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 3.1e-27 125.9 112 61.6
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.7e-26 122.9 111 59.5
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.0e-25 120.9 163 45.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.3e-25 120.6 126 47.6
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.6e-23 113.6 72 76.4
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.0e-22 110.9 70 77.1
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.3e-22 109.8 72 75.0
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 6.8e-22 108.2 82 69.5
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.0e-21 106.7 68 67.6
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.4e-21 105.5 73 71.2
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 5.4e-19 98.6 93 54.8
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-17 94.0 186 38.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.9e-17 92.8 120 48.3
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.9e-17 92.4 147 39.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 5.6e-16 88.6 104 48.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.0e-14 84.3 62 67.7
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.8e-13 78.6 77 51.9
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.3e-12 74.7 48 66.7
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.6e-10 70.5 147 33.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.6e-10 70.5 50 68.0
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 3.1e-06 56.2 70 44.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 4.0e-06 55.8 59 45.8
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 6.8e-06 55.1 37 62.2


User provided reference genes

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