Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 3.2e-162 575.5 402 100.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.5e-13 81.6 260 35.0
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.2e-12 78.6 239 35.1
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 2.1e-12 77.8 269 31.6
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 3.1e-11 73.9 233 37.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 6.8e-11 72.8 238 36.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.0e-10 71.2 229 32.8
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 5.8e-10 69.7 243 34.2
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 9.9e-10 68.9 234 35.0
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.9e-10 68.9 237 33.8
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.7e-09 68.2 234 32.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.7e-09 68.2 234 30.8
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.9e-09 67.4 234 34.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.9e-09 67.4 244 37.3
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.7e-09 67.0 236 33.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.7e-09 67.0 367 29.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.9e-09 66.6 234 35.9
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 6.4e-09 66.2 241 35.7
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-08 65.5 255 32.2
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.4e-08 65.1 234 36.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.4e-08 64.3 237 32.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.4e-08 64.3 236 33.1
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.1e-08 63.5 240 30.8
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 5.4e-08 63.2 234 32.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 5.4e-08 63.2 234 34.2
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 7.1e-08 62.8 241 35.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 7.1e-08 62.8 244 35.2
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 7.1e-08 62.8 234 33.8
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 9.2e-08 62.4 237 36.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 9.2e-08 62.4 240 33.3
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.2e-07 62.0 236 31.8
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.1e-07 61.2 234 34.2
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.1e-07 61.2 234 35.9
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.7e-07 60.8 234 30.8
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.7e-07 60.8 234 36.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.7e-07 60.8 235 36.2
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.6e-07 60.1 236 32.2
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 6.0e-07 59.7 234 31.6
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 7.8e-07 59.3 234 30.8
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.0e-06 58.9 237 31.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.0e-06 58.9 234 30.8
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.3e-06 57.8 235 31.1
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-06 57.8 229 32.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.3e-06 57.8 242 32.2
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.9e-06 57.0 247 34.8
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.9e-06 57.0 236 32.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 6.6e-06 56.2 241 34.0
Os05g0125100 Oryza sativa ssp. japonica HOM05D004499 ORTHO05D004928 8.6e-06 55.8 147 51.0
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 8.6e-06 55.8 247 33.2


User provided reference genes

Program Settings