Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb265300 Zea mays HOM05D000650 ORTHO05D000735 1.8e-90 335.9 165 100.0
Zm00001eb357770 Zea mays HOM05D000650 ORTHO05D000735 6.9e-26 121.3 61 93.4
Zm00001eb083010 Zea mays HOM05D000200 ORTHO05D000262 9.0e-26 120.9 61 93.4
Zm00001eb154270 Zea mays HOM05D000650 ORTHO05D000735 4.9e-24 115.2 59 94.9
Zm00001eb009420 Zea mays HOM05D000750 ORTHO05D000735 8.4e-24 114.4 58 93.1
Zm00001eb088210 Zea mays HOM05D002748 ORTHO05D002947 8.4e-24 114.4 59 91.5
Zm00001eb092150 Zea mays HOM05D000650 ORTHO05D000735 8.4e-24 114.4 59 93.2
Zm00001eb267780 Zea mays HOM05D001363 ORTHO05D002212 1.2e-22 110.5 89 68.5
Zm00001eb361840 Zea mays HOM05D000650 ORTHO05D000735 3.0e-21 105.9 59 86.4
Os01g0728150 Oryza sativa ssp. japonica HOM05D000650 ORTHO05D000735 1.4e-18 97.1 59 76.3
Actinidia32523 Actinidia chinensis HOM05D000650 ORTHO05D000735 4.6e-14 82.0 62 59.7
Oeu019007.1 Olea europaea HOM05D000650 ORTHO05D000735 1.3e-13 80.5 62 58.1
Oeu019008.1 Olea europaea HOM05D000650 ORTHO05D000735 1.3e-13 80.5 62 58.1
Actinidia11194 Actinidia chinensis HOM05D000650 ORTHO05D000735 1.8e-13 80.1 62 58.1
Hma1.2p1_0036F.1_g023720 Hydrangea macrophylla HOM05D000650 ORTHO05D000735 1.8e-13 80.1 62 59.7
CsaV3_6G015760 Cucumis sativus L. HOM05D000650 ORTHO05D000735 3.0e-13 79.3 62 56.5
SalBow8G3109 Salvia bowleyana HOM05D000650 ORTHO05D000735 3.9e-13 79.0 62 59.7
EL10Ac9g22653 Beta vulgaris HOM05D000650 ORTHO05D000735 5.1e-13 78.6 62 58.1
Cc05_g09230 Coffea canephora HOM05D000650 ORTHO05D000735 5.1e-13 78.6 59 62.7
ClCG02G018340 Citrullus lanatus HOM05D000650 ORTHO05D000735 6.7e-13 78.2 59 57.6
MELO3C019696.2 Cucumis melo HOM05D000650 ORTHO05D000735 8.7e-13 77.8 59 57.6
Lj1A585G42 Lonicera japonica HOM05D000650 ORTHO05D000735 8.7e-13 77.8 59 57.6
Peaxi162Scf00035g03125 Petunia axillaris HOM05D000650 ORTHO05D000735 8.7e-13 77.8 62 54.8
Sed0019880 Sechium edule HOM05D000650 ORTHO05D000735 8.7e-13 77.8 62 54.8
CDE03G0220 Ceratophyllum demersum HOM05D000238 ORTHO05D001889 1.5e-12 77.0 80 51.2
DCAR_009792 Daucus carota HOM05D000650 ORTHO05D000735 1.5e-12 77.0 62 58.1
Sed0014271 Sechium edule HOM05D000650 ORTHO05D000735 1.5e-12 77.0 62 53.2
PGR042G1665 Punica granatum HOM05D000650 ORTHO05D000735 1.9e-12 76.6 62 56.5
TAR626G0008 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.9e-12 76.6 62 59.7
AUR62014986 Chenopodium quinoa HOM05D000650 ORTHO05D000735 3.3e-12 75.9 62 53.2
AUR62029134 Chenopodium quinoa HOM05D000650 ORTHO05D000735 3.3e-12 75.9 62 53.2
PSO541G5206 Papaver somniferum HOM05D000650 ORTHO05D000735 3.3e-12 75.9 62 54.8
HPP92_009803 Vanilla planifolia HOM05D000650 ORTHO05D000735 3.3e-12 75.9 62 54.8
Peaxi162Scf00154g00062 Petunia axillaris HOM05D000650 ORTHO05D000735 4.3e-12 75.5 62 54.8
MSTRG.6761 Avicennia marina HOM05D000650 ORTHO05D000735 7.4e-12 74.7 62 53.2
CDE04G2440 Ceratophyllum demersum HOM05D000650 ORTHO05D000735 7.4e-12 74.7 62 58.1
Eucgr.A01961 Eucalyptus grandis HOM05D000650 ORTHO05D000735 7.4e-12 74.7 59 59.3
Rhsim06G0121100 Rhododendron simsii HOM05D000650 ORTHO05D000735 9.6e-12 74.3 62 54.8
Dinv06482 Davidia involucrata HOM05D000650 ORTHO05D000735 1.3e-11 73.9 62 53.2
Ah.01g003380 Amaranthus hybridus HOM05D000650 ORTHO05D000735 1.6e-11 73.6 62 54.8
Nitab4.5_0002027g0120 Nicotiana tabacum HOM05D004034 ORTHO05D000735 2.1e-11 73.2 60 50.0
PSO675G5042 Papaver somniferum HOM05D000650 ORTHO05D000735 2.1e-11 73.2 62 53.2
Nitab4.5_0001402g0080 Nicotiana tabacum HOM05D004034 ORTHO05D004210 2.8e-11 72.8 59 52.5
Ciclev10032960m.g Citrus clementina HOM05D000650 ORTHO05D000735 3.7e-11 72.4 64 54.7
MSTRG.15057 Avicennia marina HOM05D000650 ORTHO05D000735 4.8e-11 72.0 62 54.8
CiPaw.03G188300 Carya illinoinensis HOM05D000650 ORTHO05D000735 4.8e-11 72.0 60 61.7
Solyc10g007820.3 Solanum lycopersicum HOM05D000650 ORTHO05D000735 4.8e-11 72.0 62 48.4
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 6.2e-11 71.6 62 54.8
Lsat_1_v5_gn_8_32301 Lactuca sativa HOM05D000650 ORTHO05D000735 8.1e-11 71.2 62 51.6
Phvul.008G190500 Phaseolus vulgaris HOM05D000650 ORTHO05D000735 8.1e-11 71.2 63 52.4
vmacro22873 Vaccinium macrocarpon HOM05D000650 ORTHO05D000735 8.1e-11 71.2 62 51.6
vmacro23413 Vaccinium macrocarpon HOM05D000650 ORTHO05D000735 8.1e-11 71.2 62 51.6
HanXRQChr13g0388131 Helianthus annuus HOM05D000650 ORTHO05D000735 1.1e-10 70.9 62 51.6
Sopen10g003720 Solanum pennellii HOM05D000650 ORTHO05D000735 1.1e-10 70.9 62 46.8
Glyma.08G310600 Glycine max HOM05D000650 ORTHO05D000735 1.8e-10 70.1 64 57.8
Duzib147G1118 Durio zibethinus HOM05D000650 ORTHO05D000735 2.4e-10 69.7 62 46.8
CAN.G1191.7 Capsicum annuum HOM05D000650 ORTHO05D000735 3.1e-10 69.3 62 46.8
Migut.M00583 Erythranthe guttata HOM05D000650 ORTHO05D000735 4.0e-10 68.9 62 51.6
Gohir.A09G006900 Gossypium hirsutum HOM05D000650 ORTHO05D000735 5.3e-10 68.6 62 48.4
Gohir.D09G006000 Gossypium hirsutum HOM05D000650 ORTHO05D000735 5.3e-10 68.6 62 48.4
Gorai.006G007600 Gossypium raimondii HOM05D000650 ORTHO05D000735 5.3e-10 68.6 62 48.4
Psat0s1339g0040 Pisum sativum HOM05D000650 ORTHO05D000735 5.3e-10 68.6 63 52.4
VMungo0647G0535 Vigna mungo HOM05D000650 ORTHO05D000735 5.3e-10 68.6 63 50.8
Prupe.3G170400 Prunus persica HOM05D000650 ORTHO05D000735 6.9e-10 68.2 63 55.6
Aqoxy1G01897 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 1.2e-09 67.4 59 49.2
MD17G1141500 Malus domestica HOM05D000650 ORTHO05D000735 1.2e-09 67.4 62 48.4
CANSAT64G1820 Cannabis sativa HOM05D000650 ORTHO05D000735 1.5e-09 67.0 64 53.1
Cpa.g.sc50.72 Carica papaya HOM05D000650 ORTHO05D000735 1.5e-09 67.0 63 50.8
Sc01g0003920 Simmondsia chinensis HOM05D000650 ORTHO05D000735 1.5e-09 67.0 63 49.2
ECA233G0934 Erigeron canadensis HOM05D000650 ORTHO05D000735 2.0e-09 66.6 62 48.4
Manes.02G085700 Manihot esculenta HOM05D000650 ORTHO05D000735 2.0e-09 66.6 62 53.2
Glyma.18G105400 Glycine max HOM05D000650 ORTHO05D000735 2.6e-09 66.2 64 54.7
GSVIVG01000808001 Vitis vinifera HOM05D000650 ORTHO05D000735 2.6e-09 66.2 62 50.0
THA.LOC104802270 Tarenaya hassleriana HOM05D000650 ORTHO05D000735 5.8e-09 65.1 63 54.0
arahy.Tifrunner.gnm1.ann1.14KYNF Arachis hypogaea HOM05D000650 ORTHO05D000735 7.6e-09 64.7 62 45.2
arahy.Tifrunner.gnm1.ann1.L9WZHD Arachis hypogaea HOM05D000650 ORTHO05D000735 7.6e-09 64.7 62 45.2
Ca_14615_v3 Cicer arietinum L. HOM05D000650 ORTHO05D000735 7.6e-09 64.7 64 53.1
Haze_13479 Corylus avellana HOM05D000650 ORTHO05D000735 1.0e-08 64.3 67 49.3
MD09G1155500 Malus domestica HOM05D000650 ORTHO05D000735 1.0e-08 64.3 63 50.8
Phvul.006G034700 Phaseolus vulgaris HOM05D000650 ORTHO05D000735 1.7e-08 63.5 64 50.0
QL08p043741 Quercus lobata HOM05D000650 ORTHO05D000735 1.7e-08 63.5 63 50.8
Medtr5g091800 Medicago truncatula HOM05D000650 ORTHO05D000735 2.2e-08 63.2 63 49.2
Medtr3g452470 Medicago truncatula HOM05D000650 ORTHO05D000735 3.8e-08 62.4 64 50.0
VMungo0540G1363 Vigna mungo HOM05D000650 ORTHO05D000735 3.8e-08 62.4 64 50.0
Glyma.14G027000 Glycine max HOM05D000650 ORTHO05D000735 4.9e-08 62.0 63 47.6
Lalb_Chr04g0248681 Lupinus albus HOM05D000650 ORTHO05D000735 4.9e-08 62.0 65 49.2
SGA_v2.0_scaffold9G04904 Striga asiatica HOM05D000650 ORTHO05D000735 4.9e-08 62.0 63 50.8
TPR.G12628 Trifolium pratense HOM05D000650 ORTHO05D000735 4.9e-08 62.0 64 48.4
FvH4_6g37830 Fragaria vesca HOM05D000650 ORTHO05D000735 6.5e-08 61.6 71 45.1
FAN09G2528 Fragaria x ananassa HOM05D000650 ORTHO05D000735 6.5e-08 61.6 65 55.4
RcHm_v2.0_Chr2g0150981 Rosa chinensis HOM05D000650 ORTHO05D000735 6.5e-08 61.6 68 48.5
Aa31LG1G24570 Aethionema arabicum HOM05D000650 ORTHO05D000735 8.4e-08 61.2 63 46.0
FAN14G4052 Fragaria x ananassa HOM05D000650 ORTHO05D000735 1.1e-07 60.8 73 43.8
FvH4_6g37840 Fragaria vesca HOM05D000650 ORTHO05D000735 1.4e-07 60.5 68 50.0
FAN02G4499 Fragaria x ananassa HOM05D000650 ORTHO05D000735 1.9e-07 60.1 68 52.9
TAR627G0660 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.9e-07 60.1 64 48.4
arahy.Tifrunner.gnm1.ann1.IQ4Z9I Arachis hypogaea HOM05D000650 ORTHO05D000735 4.2e-07 58.9 63 46.0
Lalb_Chr10g0106781 Lupinus albus HOM05D000650 ORTHO05D000735 4.2e-07 58.9 65 47.7
RcHm_v2.0_Chr2g0150951 Rosa chinensis HOM05D000650 ORTHO05D000735 4.2e-07 58.9 68 42.6
Zm00001eb051680 Zea mays HOM05D000153 ORTHO05D025328 4.2e-07 58.9 34 82.4
Glyma.02G287900 Glycine max HOM05D000650 ORTHO05D000735 5.5e-07 58.5 63 47.6
BcaB06g29265 Brassica carinata HOM05D000650 ORTHO05D000735 7.1e-07 58.2 64 46.9
C04p69920 Brassica napus HOM05D000115 ORTHO05D005317 7.1e-07 58.2 65 46.2
BolC4t28492H Brassica oleracea HOM05D000650 ORTHO05D000735 7.1e-07 58.2 64 46.9
Psat5g185280 Pisum sativum HOM05D000650 ORTHO05D000735 7.1e-07 58.2 64 46.9
Sp4g24940 Schrenkiella parvula HOM05D000650 ORTHO05D000735 7.1e-07 58.2 64 45.3
Atru.chr6.1473 Acer truncatum HOM05D000650 ORTHO05D000735 9.3e-07 57.8 65 44.6
AL4G41430 Arabidopsis lyrata HOM05D000650 ORTHO05D000735 9.3e-07 57.8 64 46.9
A05p03210 Brassica napus HOM05D000650 ORTHO05D000735 9.3e-07 57.8 64 45.3
C04p03860 Brassica napus HOM05D000650 ORTHO05D000735 9.3e-07 57.8 64 45.3
BolC4t22022H Brassica oleracea HOM05D000650 ORTHO05D000735 9.3e-07 57.8 64 45.3
BraA05t19311Z Brassica rapa HOM05D000650 ORTHO05D000735 9.3e-07 57.8 64 45.3
A04p32400 Brassica napus HOM05D000115 ORTHO05D005317 1.6e-06 57.0 61 47.5
BraA04t18693Z Brassica rapa HOM05D000115 ORTHO05D005317 1.6e-06 57.0 61 47.5
unitig_37.g12856 Utricularia gibba HOM05D000650 ORTHO05D000735 1.6e-06 57.0 62 40.3
AT2G42820 Arabidopsis thaliana HOM05D000650 ORTHO05D000735 2.1e-06 56.6 64 45.3
Carub.0004s2526 Capsella rubella HOM05D000650 ORTHO05D000735 2.1e-06 56.6 64 45.3
Thhalv10017357m.g Eutrema salsugineum HOM05D000650 ORTHO05D000735 2.1e-06 56.6 64 45.3
Thecc.01G160000 Theobroma cacao HOM05D000650 ORTHO05D000735 2.7e-06 56.2 64 42.2
CARHR137900 Cardamine hirsuta HOM05D000650 ORTHO05D000735 3.5e-06 55.8 64 45.3


User provided reference genes

Program Settings