Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb264930 Zea mays HOM05D000697 ORTHO05D000169 3.3e-34 148.7 136 100.0
Os05g0129300 Oryza sativa ssp. japonica HOM05D000697 ORTHO05D000169 1.1e-18 97.1 108 75.0
Gohir.A07G128500 Gossypium hirsutum HOM05D000697 ORTHO05D000169 4.4e-10 68.6 109 41.3
Prupe.8G267100 Prunus persica HOM05D000697 ORTHO05D000169 1.7e-09 66.6 105 39.0
Aqoxy2G02770 Aquilegia oxysepala HOM05D000697 ORTHO05D000169 4.8e-09 65.1 108 39.8
Gohir.D07G132900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.3e-09 64.7 110 40.9
Gorai.001G144200 Gossypium raimondii HOM05D000697 ORTHO05D000169 6.3e-09 64.7 110 40.9
MD03G1295200 Malus domestica HOM05D000697 ORTHO05D000169 1.4e-08 63.5 110 38.2
PGR083G2421 Punica granatum HOM05D000697 ORTHO05D000169 1.4e-08 63.5 109 37.6
MBI18_g17318_MAGBIO Magnolia biondii HOM05D000697 ORTHO05D000169 1.8e-08 63.2 110 39.1
Sc17g0000450 Simmondsia chinensis HOM05D000697 ORTHO05D000169 1.8e-08 63.2 112 39.3
Duzib138G1356 Durio zibethinus HOM05D000697 ORTHO05D000169 3.1e-08 62.4 110 40.0
arahy.Tifrunner.gnm1.ann1.6JGL55 Arachis hypogaea HOM05D000697 ORTHO05D000169 4.1e-08 62.0 110 39.1
Duzib211G0124 Durio zibethinus HOM05D000697 ORTHO05D000169 4.1e-08 62.0 110 40.0
HanXRQChr04g0106071 Helianthus annuus HOM05D000697 ORTHO05D000169 4.1e-08 62.0 101 39.6
PSO761G0678 Papaver somniferum HOM05D000697 ORTHO05D000169 4.1e-08 62.0 109 41.3
CANSAT25G0922 Cannabis sativa HOM05D000697 ORTHO05D000169 5.3e-08 61.6 110 38.2
MBI19_g07239_MAGBIO Magnolia biondii HOM05D000697 ORTHO05D000169 5.3e-08 61.6 110 38.2
Manes.05G003300 Manihot esculenta HOM05D000697 ORTHO05D000169 5.3e-08 61.6 110 39.1
QL12p019949 Quercus lobata HOM05D000697 ORTHO05D000169 5.3e-08 61.6 110 40.9
ClCG10G011390 Citrullus lanatus HOM05D000697 ORTHO05D000169 7.0e-08 61.2 104 39.4
MELO3C017918.2 Cucumis melo HOM05D000697 ORTHO05D000169 7.0e-08 61.2 104 39.4
CsaV3_4G001220 Cucumis sativus L. HOM05D000697 ORTHO05D000169 7.0e-08 61.2 104 39.4
Glyma.03G219300 Glycine max HOM05D000697 ORTHO05D000169 7.0e-08 61.2 110 39.1
MD11G1314100 Malus domestica HOM05D000697 ORTHO05D000169 7.0e-08 61.2 110 38.2
Glyma.19G216200 Glycine max HOM05D000697 ORTHO05D000169 9.1e-08 60.8 110 39.1
Manes.01G227900 Manihot esculenta HOM05D000697 ORTHO05D000169 9.1e-08 60.8 110 39.1
Eucgr.H01022 Eucalyptus grandis HOM05D000697 ORTHO05D000169 1.2e-07 60.5 109 40.4
Eucgr.L01254 Eucalyptus grandis HOM05D000697 ORTHO05D000169 1.2e-07 60.5 109 38.5
Lj1g0028029 Lotus japonicus HOM05D000697 ORTHO05D000169 1.2e-07 60.5 109 36.7
Oeu008473.1 Olea europaea HOM05D000697 ORTHO05D000169 1.2e-07 60.5 110 40.0
PSO210G6856 Papaver somniferum HOM05D000697 ORTHO05D000169 1.2e-07 60.5 108 40.7
SGA_v2.0_scaffold334G49066 Striga asiatica HOM05D000697 ORTHO05D000169 1.2e-07 60.5 101 38.6
Cpa.g.sc18.43 Carica papaya HOM05D000697 ORTHO05D000169 1.5e-07 60.1 110 37.3
COL.COLO4_23232 Corchorus olitorius HOM05D000697 ORTHO05D000169 1.5e-07 60.1 110 39.1
Duzib133G0134 Durio zibethinus HOM05D000697 ORTHO05D000169 1.5e-07 60.1 110 40.0
HanXRQChr06g0168171 Helianthus annuus HOM05D000697 ORTHO05D000169 1.5e-07 60.1 101 38.6
TAR362G0901 Trochodendron aralioides HOM05D000697 ORTHO05D000169 1.5e-07 60.1 110 38.2
Sed0010222 Sechium edule HOM05D000697 ORTHO05D000169 2.0e-07 59.7 100 38.0
Aqoxy5G02880 Aquilegia oxysepala HOM05D000697 ORTHO05D000169 2.6e-07 59.3 101 38.6
Oeu038018.1 Olea europaea HOM05D000697 ORTHO05D000169 2.6e-07 59.3 105 37.1
HPP92_013525 Vanilla planifolia HOM05D000697 ORTHO05D000169 2.6e-07 59.3 109 38.5
ATR0796G285 Amborella trichopoda HOM05D000697 ORTHO05D000169 3.4e-07 58.9 110 37.3
Eucgr.K03544 Eucalyptus grandis HOM05D000697 ORTHO05D000169 3.4e-07 58.9 109 37.6
TAR365G0994 Trochodendron aralioides HOM05D000697 ORTHO05D000169 3.4e-07 58.9 110 37.3
VMungo1383G1971 Vigna mungo HOM05D000697 ORTHO05D000169 3.4e-07 58.9 110 38.2
ECA236G0269 Erigeron canadensis HOM05D000697 ORTHO05D000169 4.5e-07 58.5 101 37.6
Lsat_1_v5_gn_8_166781 Lactuca sativa HOM05D000697 ORTHO05D000169 4.5e-07 58.5 110 38.2
Lj5g0026084 Lotus japonicus HOM05D000697 ORTHO05D000169 4.5e-07 58.5 100 37.0
HPP92_003568 Vanilla planifolia HOM05D000697 ORTHO05D000169 4.5e-07 58.5 104 35.6
Ciclev10022730m.g Citrus clementina HOM05D000697 ORTHO05D000169 5.9e-07 58.2 110 35.5
Migut.D00084 Erythranthe guttata HOM05D000697 ORTHO05D000169 5.9e-07 58.2 110 37.3
PGR044G0370 Punica granatum HOM05D000697 ORTHO05D000169 5.9e-07 58.2 109 35.8
Thhalv10006418m.g Eutrema salsugineum HOM05D000697 ORTHO05D000169 7.7e-07 57.8 110 39.1
Phvul.001G212800 Phaseolus vulgaris HOM05D000697 ORTHO05D000169 7.7e-07 57.8 105 37.1
Potri.002G196200 Populus trichocarpa HOM05D000697 ORTHO05D000169 7.7e-07 57.8 101 36.6
Sed0003599 Sechium edule HOM05D000697 ORTHO05D000169 7.7e-07 57.8 104 37.5
AUR62011806 Chenopodium quinoa HOM05D000697 ORTHO05D000169 1.0e-06 57.4 105 39.0
AUR62024652 Chenopodium quinoa HOM05D000697 ORTHO05D000169 1.0e-06 57.4 105 39.0
Psat0s2991g0040 Pisum sativum HOM05D000697 ORTHO05D000169 1.0e-06 57.4 105 37.1
SalBow2G3006 Salvia bowleyana HOM05D000697 ORTHO05D000169 1.0e-06 57.4 105 36.2
Ah.02g112290 Amaranthus hybridus HOM05D000697 ORTHO05D000169 1.3e-06 57.0 105 38.1
Cc02_g35020 Coffea canephora HOM05D000697 ORTHO05D000169 1.3e-06 57.0 109 36.7
Gohir.D11G114200 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.3e-06 57.0 110 40.0
Gorai.007G122800 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.3e-06 57.0 110 40.0
unitig_736.g22936 Utricularia gibba HOM05D000697 ORTHO05D000169 1.3e-06 57.0 110 36.4
Hma1.2p1_0212F.1_g089940 Hydrangea macrophylla HOM05D000697 ORTHO05D000169 1.7e-06 56.6 107 35.5
Lj1C17T9 Lonicera japonica HOM05D000697 ORTHO05D000169 1.7e-06 56.6 111 35.1
Phvul.007G214300 Phaseolus vulgaris HOM05D000697 ORTHO05D000169 1.7e-06 56.6 106 37.7
Potri.014G120800 Populus trichocarpa HOM05D000697 ORTHO05D000169 1.7e-06 56.6 100 36.0
SGA_v2.0_scaffold36G14321 Striga asiatica HOM05D000697 ORTHO05D000169 1.7e-06 56.6 109 34.9
Zm00001eb028430 Zea mays HOM05D000697 ORTHO05D000169 1.7e-06 56.6 103 53.4
Zm00001eb136980 Zea mays HOM05D000697 ORTHO05D000169 1.7e-06 56.6 115 63.5
AL5G45220 Arabidopsis lyrata HOM05D000697 ORTHO05D000169 2.2e-06 56.2 110 38.2
AT3G62420 Arabidopsis thaliana HOM05D000697 ORTHO05D000169 2.2e-06 56.2 110 38.2
CiPaw.07G117500 Carya illinoinensis HOM05D000697 ORTHO05D000169 2.2e-06 56.2 110 36.4
Rhsim01G0290700 Rhododendron simsii HOM05D000697 ORTHO05D000169 2.2e-06 56.2 104 37.5
Thecc.01G313300 Theobroma cacao HOM05D000697 ORTHO05D000169 2.2e-06 56.2 110 37.3
MSTRG.21686 Avicennia marina HOM05D000697 ORTHO05D000169 2.9e-06 55.8 110 38.2
BraA09t40851Z Brassica rapa HOM05D000697 ORTHO05D000169 2.9e-06 55.8 110 39.1
Carub.0005s2914 Capsella rubella HOM05D000697 ORTHO05D000169 2.9e-06 55.8 110 38.2
Cfa005801 Carpinus fangiana HOM05D000697 ORTHO05D000169 2.9e-06 55.8 110 37.3
CDE02G3005 Ceratophyllum demersum HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 35.5
CDE08G1122 Ceratophyllum demersum HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 35.5
Dinv10098 Davidia involucrata HOM05D000697 ORTHO05D000169 3.8e-06 55.5 108 36.1
Gorai.008G139700 Gossypium raimondii HOM05D000697 ORTHO05D000169 3.8e-06 55.5 101 37.6
THA.LOC104800343 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 38.2
THA.LOC104800346 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 38.2
THA.LOC104827669 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 38.2
TWI18G0286 Tripterygium wilfordii HOM05D000697 ORTHO05D000169 3.8e-06 55.5 110 36.4
BcaC07g40726 Brassica carinata HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
BcaC07g42753 Brassica carinata HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
BcaC07g42759 Brassica carinata HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
A09p54390 Brassica napus HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
C08p37270 Brassica napus HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
BolC8t51305H Brassica oleracea HOM05D000697 ORTHO05D000169 5.0e-06 55.1 110 38.2
PSO170G1051 Papaver somniferum HOM05D000697 ORTHO05D000169 5.0e-06 55.1 107 35.5
EL10As5g23530 Beta vulgaris HOM05D000697 ORTHO05D000169 6.5e-06 54.7 105 36.2
Gohir.D12G128700 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.5e-06 54.7 101 37.6
THA.LOC104817459 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 6.5e-06 54.7 110 38.2
Gohir.A11G110000 Gossypium hirsutum HOM05D000697 ORTHO05D000169 8.5e-06 54.3 101 39.6
Sp5g00990 Schrenkiella parvula HOM05D000697 ORTHO05D000169 8.5e-06 54.3 110 37.3


User provided reference genes

Program Settings