Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.8e-22 107.8 58 100.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.8e-21 105.1 58 98.3
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.7e-16 88.6 59 83.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.5e-12 75.5 56 73.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.8e-12 73.6 55 70.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.3e-11 72.4 55 69.1
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.3e-11 72.4 56 73.2
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.7e-11 72.0 53 73.6
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-11 72.0 56 71.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-11 72.0 56 71.4
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.7e-11 72.0 55 72.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.7e-11 72.0 56 71.4
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.7e-11 72.0 53 75.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.7e-11 72.0 54 66.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.2e-11 71.6 56 71.4
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-11 71.6 56 71.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-11 71.6 56 71.4
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.2e-11 71.6 55 69.1
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.9e-11 71.2 53 75.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.9e-11 71.2 56 69.6
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.9e-11 71.2 52 71.2
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.9e-11 71.2 55 67.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.9e-11 71.2 56 69.6
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.9e-11 71.2 56 69.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.9e-11 71.2 53 73.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.9e-11 71.2 56 67.9
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.9e-11 71.2 56 69.6
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.9e-11 71.2 53 71.7
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.7e-11 70.9 53 73.6
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.7e-11 70.9 53 73.6
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.9e-11 70.5 56 69.6
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.9e-11 70.5 53 71.7
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 4.9e-11 70.5 53 71.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.9e-11 70.5 53 71.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.9e-11 70.5 53 71.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.9e-11 70.5 56 67.9
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.9e-11 70.5 56 69.6
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.4e-11 70.1 53 71.7
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.4e-11 70.1 55 69.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 6.4e-11 70.1 56 67.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.4e-11 70.1 53 71.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.4e-11 70.1 56 67.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.4e-11 70.1 56 69.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 66.1
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 66.1
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 66.1
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 66.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 66.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.1e-10 69.3 56 67.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.4e-10 68.9 56 64.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.4e-10 68.9 56 66.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-10 68.9 56 67.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.4e-10 68.9 56 66.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-10 68.6 56 64.3
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-10 68.6 56 64.3
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.4e-10 68.2 58 63.8
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 2.4e-10 68.2 56 64.3
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.4e-10 68.2 56 64.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 2.4e-10 68.2 53 67.9
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 3.2e-10 67.8 56 66.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.2e-10 67.8 57 64.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.2e-10 67.8 56 66.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.2e-10 67.8 56 64.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.2e-10 67.8 56 64.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.2e-10 67.8 57 64.9
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.2e-10 67.8 57 64.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.2e-10 67.8 57 64.9
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.1e-10 67.4 56 64.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.1e-10 67.4 56 64.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 4.1e-10 67.4 56 66.1
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 4.1e-10 67.4 56 64.3
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 4.1e-10 67.4 56 64.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.1e-10 67.4 58 62.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 5.4e-10 67.0 57 64.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.4e-10 67.0 56 64.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.4e-10 67.0 56 64.3
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.4e-10 67.0 57 63.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 7.1e-10 66.6 57 63.2
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 7.1e-10 66.6 53 66.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.1e-10 66.6 53 66.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.1e-10 66.6 53 66.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 7.1e-10 66.6 53 66.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 7.1e-10 66.6 56 62.5
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 7.1e-10 66.6 53 66.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 9.2e-10 66.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.2e-09 65.9 53 67.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 62.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 60.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-09 65.9 53 67.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-09 65.9 53 67.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.2e-09 65.9 53 67.9
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 60.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 62.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 62.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.2e-09 65.9 56 62.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.6e-09 65.5 53 64.2
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-09 65.5 53 62.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.6e-09 65.5 57 63.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-09 65.5 59 62.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-09 65.5 59 62.7
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.6e-09 65.5 56 62.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-09 65.1 56 62.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-09 65.1 56 62.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.7e-09 64.7 56 60.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.7e-09 64.7 53 60.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.7e-09 64.7 53 64.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-09 63.9 43 69.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-09 63.9 43 69.8
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.6e-09 63.9 53 62.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.6e-09 63.9 56 58.9
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 4.6e-09 63.9 56 58.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.0e-09 63.5 56 57.1
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 7.8e-09 63.2 57 57.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.0e-08 62.8 53 64.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.0e-08 62.8 56 60.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.0e-08 62.8 56 60.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-08 62.8 56 60.7
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-08 62.8 56 60.7
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-08 62.8 56 60.7
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-08 62.8 57 57.9
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-08 62.8 56 57.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-08 62.4 57 56.1
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.3e-08 62.4 56 60.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.3e-08 61.6 57 56.1
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.9e-08 60.8 56 55.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 5.1e-08 60.5 59 62.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-08 60.1 39 74.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-08 60.1 39 74.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.1e-07 59.3 43 67.4
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.5e-07 58.9 52 55.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 4.3e-07 57.4 57 57.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 9.5e-07 56.2 57 57.9
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.6e-06 55.5 57 56.1
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.1e-06 53.1 43 65.1


User provided reference genes

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