Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb260280 Zea mays HOM05D004113 ORTHO05D005233 9.3e-72 274.2 241 100.0
Zm00001eb174300 Zea mays HOM05D004113 ORTHO05D005233 4.3e-45 185.7 224 68.3
Os08g0108100 Oryza sativa ssp. japonica HOM05D004113 ORTHO05D005233 8.5e-41 171.4 220 56.4
Os12g0283400 Oryza sativa ssp. japonica HOM05D004113 ORTHO05D005233 1.6e-39 167.2 221 64.7
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 1.2e-18 97.8 155 38.1
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 2.6e-18 96.7 155 38.1
FAN16G3582 Fragaria x ananassa HOM05D004113 ORTHO05D005233 1.7e-17 94.0 155 37.4
TWI75G0632 Tripterygium wilfordii HOM05D004113 ORTHO05D005233 2.9e-17 93.2 161 37.9
HPP92_012690 Vanilla planifolia HOM05D004113 ORTHO05D005233 3.8e-17 92.8 162 36.4
HPP92_012697 Vanilla planifolia HOM05D004113 ORTHO05D005233 3.8e-17 92.8 162 36.4
EL10Ac1g01806 Beta vulgaris HOM05D004113 ORTHO05D005233 5.0e-17 92.4 159 34.0
FvH4_1g24160 Fragaria vesca HOM05D004113 ORTHO05D005233 5.0e-17 92.4 155 37.4
FAN19G1994 Fragaria x ananassa HOM05D004113 ORTHO05D005233 5.0e-17 92.4 155 37.4
VMungo0251G1253 Vigna mungo HOM05D004113 ORTHO05D005233 6.5e-17 92.0 155 34.2
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 1.5e-16 90.9 155 35.5
FAN26G3157 Fragaria x ananassa HOM05D004113 ORTHO05D005233 1.5e-16 90.9 155 36.8
RcHm_v2.0_Chr2g0120401 Rosa chinensis HOM05D004113 ORTHO05D005233 1.5e-16 90.9 155 36.1
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 1.9e-16 90.5 158 36.1
Aa31LG1G17330 Aethionema arabicum HOM05D004113 ORTHO05D005233 3.2e-16 89.7 154 35.1
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 3.2e-16 89.7 155 36.1
CARHR278590 Cardamine hirsuta HOM05D004113 ORTHO05D005233 5.5e-16 89.0 155 35.5
THA.LOC104819318 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 5.5e-16 89.0 154 35.1
TPR.G34657 Trifolium pratense HOM05D004113 ORTHO05D005233 5.5e-16 89.0 155 34.2
FAN28G2384 Fragaria x ananassa HOM05D004113 ORTHO05D005233 7.2e-16 88.6 155 36.8
Lj1g0003494 Lotus japonicus HOM05D004113 ORTHO05D005233 7.2e-16 88.6 155 35.5
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 9.4e-16 88.2 155 34.8
BcaB02g09804 Brassica carinata HOM05D004113 ORTHO05D005233 9.4e-16 88.2 161 34.8
Cpa.g.sc42.138 Carica papaya HOM05D004113 ORTHO05D005233 9.4e-16 88.2 155 35.5
MD01G1038300 Malus domestica HOM05D004113 ORTHO05D005233 9.4e-16 88.2 155 35.5
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 9.4e-16 88.2 160 35.6
BolC3t18417H Brassica oleracea HOM05D004113 ORTHO05D005233 1.6e-15 87.4 160 35.6
MELO3C008049.2 Cucumis melo HOM05D004113 ORTHO05D005233 1.6e-15 87.4 158 37.3
CANSAT01G1731 Cannabis sativa HOM05D004113 ORTHO05D005233 2.1e-15 87.0 151 35.8
Cfa002816 Carpinus fangiana HOM05D004113 ORTHO05D005233 2.1e-15 87.0 158 35.4
Haze_25111 Corylus avellana HOM05D004113 ORTHO05D005233 2.1e-15 87.0 158 34.8
TAR628G1510 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.1e-15 87.0 158 36.7
BcaC01g02693 Brassica carinata HOM05D004113 ORTHO05D005233 2.7e-15 86.7 160 35.0
C03p61570 Brassica napus HOM05D004113 ORTHO05D005233 2.7e-15 86.7 160 35.0
CANSAT01G2965 Cannabis sativa HOM05D004113 ORTHO05D005233 2.7e-15 86.7 151 35.8
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 2.7e-15 86.7 158 34.8
Lalb_Chr08g0238441 Lupinus albus HOM05D004113 ORTHO05D005233 2.7e-15 86.7 155 34.8
Nn5g28620 Nelumbo nucifera HOM05D004113 ORTHO05D005233 2.7e-15 86.7 158 36.1
Psat0s10365g0080 Pisum sativum HOM05D004113 ORTHO05D005233 4.7e-15 85.9 155 32.9
Psat5g060000 Pisum sativum HOM05D004113 ORTHO05D005233 4.7e-15 85.9 155 32.9
CiPaw.03G129200 Carya illinoinensis HOM05D004113 ORTHO05D005233 6.1e-15 85.5 161 36.0
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 6.1e-15 85.5 160 35.6
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 8.0e-15 85.1 155 34.2
Medtr3g095980 Medicago truncatula HOM05D004113 ORTHO05D005233 8.0e-15 85.1 155 33.5
Thecc.01G128300 Theobroma cacao HOM05D004113 ORTHO05D005233 8.0e-15 85.1 155 36.1
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 1.0e-14 84.7 160 34.4
Duzib147G1472 Durio zibethinus HOM05D004113 ORTHO05D005233 1.0e-14 84.7 155 34.2
Gohir.A11G230200 Gossypium hirsutum HOM05D004113 ORTHO05D005233 1.4e-14 84.3 161 39.8
CARHR287460 Cardamine hirsuta HOM05D004113 ORTHO05D005233 1.8e-14 84.0 155 34.8
Gorai.003G067200 Gossypium raimondii HOM05D004113 ORTHO05D005233 1.8e-14 84.0 161 39.8
MD15G1314600 Malus domestica HOM05D004113 ORTHO05D005233 2.3e-14 83.6 155 33.5
Glyma.04G214000 Glycine max HOM05D004113 ORTHO05D005233 3.0e-14 83.2 155 32.9
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 3.0e-14 83.2 158 34.2
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 4.0e-14 82.8 155 34.8
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 4.0e-14 82.8 155 34.8
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 4.0e-14 82.8 160 34.4
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 4.0e-14 82.8 160 34.4
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 4.0e-14 82.8 160 34.4
VMungo1309G2376 Vigna mungo HOM05D004113 ORTHO05D005233 5.2e-14 82.4 155 32.3
BcaC04g23305 Brassica carinata HOM05D004113 ORTHO05D005233 6.7e-14 82.0 160 34.4
CsaV3_6G041710 Cucumis sativus L. HOM05D004113 ORTHO05D005233 6.7e-14 82.0 158 34.8
Glyma.06G152400 Glycine max HOM05D004113 ORTHO05D005233 6.7e-14 82.0 155 32.9
Gohir.D11G230300 Gossypium hirsutum HOM05D004113 ORTHO05D005233 6.7e-14 82.0 161 39.1
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 6.7e-14 82.0 155 32.3
C09p09900 Brassica napus HOM05D004113 ORTHO05D005233 8.8e-14 81.6 160 34.4
BolC9t53899H Brassica oleracea HOM05D004113 ORTHO05D005233 8.8e-14 81.6 160 34.4
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 8.8e-14 81.6 155 34.8
CiPaw.04G086900 Carya illinoinensis HOM05D004113 ORTHO05D005233 1.2e-13 81.3 165 35.2
Migut.H00735 Erythranthe guttata HOM05D004113 ORTHO05D005233 1.5e-13 80.9 155 33.5
Migut.L00890 Erythranthe guttata HOM05D004113 ORTHO05D005233 2.0e-13 80.5 159 34.6
Gohir.D10G106500 Gossypium hirsutum HOM05D004113 ORTHO05D005233 2.6e-13 80.1 154 35.1
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 2.6e-13 80.1 158 33.5
THA.LOC104799518 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 2.6e-13 80.1 154 34.4
Peaxi162Scf00589g00001 Petunia axillaris HOM05D004113 ORTHO05D005233 4.4e-13 79.3 158 34.8
Gorai.011G116700 Gossypium raimondii HOM05D004113 ORTHO05D005233 5.7e-13 79.0 150 34.7
Phvul.009G149400 Phaseolus vulgaris HOM05D004113 ORTHO05D005233 5.7e-13 79.0 155 31.6
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 7.5e-13 78.6 158 34.2
Hma1.2p1_0528F.1_g173060 Hydrangea macrophylla HOM05D004113 ORTHO05D005233 9.7e-13 78.2 161 32.3
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 1.3e-12 77.8 155 32.3
CDE08G0148 Ceratophyllum demersum HOM05D004113 ORTHO05D005233 1.3e-12 77.8 158 32.9
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 1.3e-12 77.8 158 33.5
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 1.3e-12 77.8 158 33.5
SGA_v2.0_scaffold355G49762 Striga asiatica HOM05D004113 ORTHO05D005233 1.3e-12 77.8 155 36.1
Sed0011375 Sechium edule HOM05D004113 ORTHO05D005233 1.7e-12 77.4 158 32.9
Sed0024266 Sechium edule HOM05D004113 ORTHO05D005233 1.7e-12 77.4 166 33.1
Gohir.A10G084907 Gossypium hirsutum HOM05D004113 ORTHO05D005233 2.2e-12 77.0 155 34.2
Aqoxy5G02176 Aquilegia oxysepala HOM05D004113 ORTHO05D005233 2.8e-12 76.6 158 34.2
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 2.8e-12 76.6 158 33.5
DCAR_001364 Daucus carota HOM05D004113 ORTHO05D005233 2.8e-12 76.6 158 31.6
PSO063G6208 Papaver somniferum HOM05D004113 ORTHO05D005233 2.8e-12 76.6 157 32.5
TAR628G0877 Trochodendron aralioides HOM05D004113 ORTHO05D005233 6.3e-12 75.5 158 33.5
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 8.2e-12 75.1 155 33.5
Lalb_Chr00c34g0408621 Lupinus albus HOM05D004113 ORTHO05D005233 1.1e-11 74.7 159 32.1
Lalb_Chr12g0203181 Lupinus albus HOM05D004113 ORTHO05D005233 1.1e-11 74.7 159 32.1
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 1.1e-11 74.7 158 31.6
PSO782G3380 Papaver somniferum HOM05D004113 ORTHO05D005233 1.1e-11 74.7 157 32.5
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 1.8e-11 73.9 161 31.7
Sc01g0006950 Simmondsia chinensis HOM05D004113 ORTHO05D005233 1.8e-11 73.9 155 32.3
BcaC01g02692 Brassica carinata HOM05D004113 ORTHO05D005233 5.3e-11 72.4 133 34.6
C03p61580 Brassica napus HOM05D004113 ORTHO05D005233 5.3e-11 72.4 133 34.6
ClCG01G015470 Citrullus lanatus HOM05D004113 ORTHO05D005233 3.5e-10 69.7 143 35.7
HanXRQChr12g0368871 Helianthus annuus HOM05D004113 ORTHO05D005233 3.5e-10 69.7 155 30.3
COL.COLO4_35683 Corchorus olitorius HOM05D004113 ORTHO05D005233 1.0e-09 68.2 79 46.8
PSO837G0029 Papaver somniferum HOM05D004113 ORTHO05D005233 1.7e-09 67.4 161 30.4
AUR62040065 Chenopodium quinoa HOM05D004113 ORTHO05D005233 6.5e-09 65.5 80 40.0
PSO017G1826 Papaver somniferum HOM05D004113 ORTHO05D005233 6.5e-09 65.5 161 30.4
Potri.007G108301 Populus trichocarpa HOM05D004113 ORTHO05D005233 6.5e-09 65.5 155 40.0
CDE06G1377 Ceratophyllum demersum HOM05D004113 ORTHO05D005233 1.5e-08 64.3 81 42.0
Zm00001eb260290 Zea mays HOM05D004113 ORTHO05D005233 1.9e-08 63.9 40 82.5
Actinidia06637 Actinidia chinensis HOM05D004113 ORTHO05D005233 2.5e-08 63.5 82 45.1
AUR62022459 Chenopodium quinoa HOM05D004113 ORTHO05D005233 2.5e-08 63.5 80 38.8
A06p31350 Brassica napus HOM05D004113 ORTHO05D005233 1.6e-07 60.8 85 40.0
Zm00001eb083160 Zea mays HOM05D004113 ORTHO05D005233 2.7e-07 60.1 40 75.0
Nitab4.5_0000805g0060 Nicotiana tabacum HOM05D004113 ORTHO05D005233 4.7e-07 59.3 82 41.5
Nitab4.5_0011816g0010 Nicotiana tabacum HOM05D004113 ORTHO05D005233 4.7e-07 59.3 82 41.5
Manes.10G035200 Manihot esculenta HOM05D004113 ORTHO05D005233 4.0e-06 56.2 162 26.5


User provided reference genes

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