Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 0.0e+00 1080.5 551 100.0
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 2.1e-273 945.3 553 86.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.3e-262 909.4 503 91.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 6.1e-220 767.7 552 68.5
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 8.0e-220 767.3 557 68.2
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 3.0e-219 765.4 556 68.0
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 4.0e-219 765.0 553 67.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.0e-218 762.7 553 67.6
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 2.6e-218 762.3 557 67.1
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.6e-218 762.3 562 68.1
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 2.6e-218 762.3 558 68.5
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.3e-218 761.9 553 67.8
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.5e-218 760.8 549 68.1
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.7e-218 760.4 556 67.4
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.3e-217 760.0 553 67.5
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.7e-217 759.6 556 67.4
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.2e-217 759.2 554 68.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.8e-217 758.1 549 68.1
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.3e-217 757.7 549 67.8
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 8.2e-217 757.3 553 67.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.3e-216 754.6 557 67.5
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 2.0e-215 752.7 556 67.4
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.7e-215 752.3 555 66.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 4.5e-215 751.5 556 67.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 7.7e-215 750.7 557 67.1
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-214 749.6 557 67.3
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.9e-214 748.8 557 67.5
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.9e-214 748.8 557 67.3
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 5.0e-214 748.0 555 67.7
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 6.5e-214 747.7 555 65.4
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.9e-213 746.1 558 65.4
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.5e-213 745.7 558 66.7
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 4.2e-213 745.0 557 65.9
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 5.5e-213 744.6 557 67.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-212 743.4 556 66.5
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.7e-212 742.3 550 66.4
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.6e-212 741.9 554 66.4
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.7e-212 741.5 554 66.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 6.1e-212 741.1 552 66.8
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 8.0e-212 740.7 554 67.1
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-211 739.6 572 65.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.3e-211 739.2 550 65.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.0e-211 738.4 557 66.1
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 4.0e-211 738.4 557 66.1
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 4.0e-211 738.4 557 65.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 8.8e-211 737.3 552 65.2
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.2e-210 736.9 561 67.0
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.0e-210 736.1 557 64.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.4e-210 735.3 561 65.4
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 3.4e-210 735.3 556 65.6
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 4.4e-210 734.9 557 66.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 5.7e-210 734.6 624 60.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 7.5e-210 734.2 556 65.8
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 7.5e-210 734.2 547 66.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 9.8e-210 733.8 561 65.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 9.8e-210 733.8 558 64.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 9.8e-210 733.8 550 66.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.3e-209 733.4 561 64.9
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-209 733.0 580 64.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.7e-209 733.0 550 65.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.8e-209 731.5 550 66.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.4e-208 729.9 554 65.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.8e-208 729.6 557 64.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 4.1e-208 728.4 553 66.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 5.4e-208 728.0 570 63.5
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 9.1e-208 727.2 552 65.0
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.2e-207 726.9 548 65.3
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.5e-207 724.9 551 65.2
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 7.7e-207 724.2 559 64.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.3e-206 723.4 550 64.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.7e-206 723.0 557 64.8
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.2e-206 722.6 553 65.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.9e-206 722.2 553 64.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 6.5e-206 721.1 547 64.5
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 6.5e-206 721.1 564 65.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 8.5e-206 720.7 550 64.7
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-205 720.3 550 65.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.9e-205 719.5 550 64.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 3.2e-205 718.8 544 65.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.2e-205 718.4 548 65.5
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.2e-205 718.4 548 65.5
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 5.5e-205 718.0 561 65.1
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 9.5e-205 717.2 530 67.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.2e-204 716.8 550 64.2
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.1e-204 716.1 552 65.6
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-204 715.7 548 65.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.7e-204 715.7 533 68.1
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.6e-204 715.3 556 65.1
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.7e-204 714.9 547 64.0
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.7e-204 714.9 558 64.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 6.1e-204 714.5 547 64.5
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-203 713.8 547 64.9
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 3.0e-203 712.2 535 66.5
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.0e-203 712.2 550 65.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.0e-202 709.5 604 60.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.4e-202 708.4 544 64.7
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.7e-202 708.0 550 64.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.8e-201 705.7 553 64.2
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.3e-201 704.1 546 65.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.8e-200 703.0 595 61.0
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 4.1e-200 701.8 540 64.1
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.5e-199 698.4 553 62.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.3e-198 696.8 592 61.7
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.7e-198 696.4 537 64.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.3e-198 696.0 547 63.3
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.3e-198 696.0 549 63.4
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.6e-198 694.1 549 63.2
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 7.3e-197 691.0 633 57.8
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.7e-196 688.3 602 60.0
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-194 683.7 526 65.2
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.0e-194 682.9 532 63.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 9.2e-192 674.1 554 61.7
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.7e-190 669.8 559 62.3
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.5e-189 666.0 505 64.2
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.1e-187 659.1 553 60.4
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 2.0e-186 656.4 553 60.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 6.4e-185 651.4 449 69.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.0e-182 642.5 553 58.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.4e-179 633.6 576 58.0
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.2e-177 626.3 479 64.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.9e-177 625.9 472 65.9
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.1e-174 615.1 480 64.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-173 614.0 555 58.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.5e-173 612.8 553 56.4
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.6e-162 576.2 551 54.1
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.4e-152 543.9 411 66.9
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 2.6e-146 523.1 359 72.4
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.3e-142 510.0 386 64.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 7.4e-141 505.0 389 63.8
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 8.2e-140 501.5 389 63.5
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.6e-135 487.3 517 47.8
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 6.0e-135 485.3 547 47.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.6e-132 477.2 360 65.0
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 7.9e-111 405.2 324 63.3
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 9.7e-109 398.3 272 68.0
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-105 388.3 283 67.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.0e-98 364.0 220 75.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-77 294.7 195 68.7
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 8.9e-70 268.9 197 69.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 3.0e-57 227.3 176 64.2
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-48 198.4 141 68.8
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 3.2e-43 180.6 151 58.3
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-39 168.3 146 56.8
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-39 168.3 116 67.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-35 154.8 185 46.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.6e-26 125.2 85 74.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.6e-18 98.6 127 41.7
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.4e-16 89.7 84 51.2
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.2e-13 82.4 96 50.0
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.5e-13 82.0 89 50.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.3e-12 79.0 84 53.6
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.0e-12 77.0 55 69.1
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.2e-11 74.3 78 56.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 5.3e-06 57.0 118 33.9


User provided reference genes

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