Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.2e-176 621.7 327 100.0
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.4e-118 430.3 327 73.1
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 4.4e-101 372.1 327 62.7
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 8.3e-100 367.9 327 61.8
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 1.4e-99 367.1 330 62.1
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 5.4e-99 365.2 327 62.1
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 2.1e-98 363.2 328 62.5
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 3.5e-98 362.5 329 61.7
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 2.3e-97 359.8 327 61.2
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 2.3e-97 359.8 330 62.4
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 5.1e-97 358.6 331 61.3
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 6.6e-97 358.2 330 59.1
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 8.6e-97 357.8 328 60.1
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.9e-96 356.7 328 61.3
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 1.9e-96 356.7 328 61.0
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 2.5e-96 356.3 328 61.3
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 4.3e-96 355.5 327 61.5
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.3e-96 355.5 328 61.0
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 5.6e-96 355.1 327 59.9
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 7.3e-96 354.8 327 59.9
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 7.3e-96 354.8 327 59.6
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 7.3e-96 354.8 328 60.4
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 9.6e-96 354.4 328 60.1
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 9.6e-96 354.4 327 59.9
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.2e-95 354.0 327 60.9
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 1.2e-95 354.0 330 60.6
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.8e-95 352.8 327 60.9
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.7e-95 352.1 333 59.8
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 4.7e-95 352.1 327 61.8
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 6.2e-95 351.7 327 59.6
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 1.4e-94 350.5 328 61.0
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.8e-94 350.1 327 61.2
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.8e-94 350.1 328 59.5
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 1.8e-94 350.1 328 60.7
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 4.0e-94 349.0 325 60.0
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 4.0e-94 349.0 328 58.5
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.2e-93 347.4 327 60.6
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.8e-93 345.1 327 58.4
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.8e-93 345.1 327 58.4
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 5.8e-93 345.1 327 59.3
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 7.6e-93 344.7 327 60.2
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 9.9e-93 344.4 327 59.6
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.3e-92 344.0 327 59.3
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 1.7e-92 343.6 328 58.8
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 2.2e-92 343.2 328 59.5
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.8e-92 342.4 327 59.6
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 6.4e-92 341.7 327 59.9
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 8.4e-92 341.3 327 58.4
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 8.4e-92 341.3 328 58.8
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.4e-91 340.5 331 58.9
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.9e-91 340.1 327 59.6
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 3.2e-91 339.3 327 57.8
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 7.1e-91 338.2 327 57.5
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 9.3e-91 337.8 328 58.8
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 9.3e-91 337.8 319 59.2
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 2.1e-90 336.7 327 57.5
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 2.7e-90 336.3 327 57.2
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 2.7e-90 336.3 327 57.5
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 3.5e-90 335.9 325 59.4
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 4.6e-90 335.5 329 57.8
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.0e-89 334.3 330 57.0
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-89 332.8 327 57.8
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 6.6e-89 331.6 329 57.8
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 6.6e-89 331.6 327 57.5
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 6.6e-89 331.6 327 57.5
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.5e-88 330.5 329 57.8
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.5e-88 329.7 351 54.1
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 4.3e-88 328.9 327 57.5
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 4.3e-88 328.9 327 58.1
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.6e-88 327.8 327 57.5
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.3e-87 327.4 329 55.6
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 2.1e-87 326.6 327 57.8
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 2.1e-87 326.6 327 58.1
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 2.8e-87 326.2 329 56.5
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 6.2e-87 325.1 390 51.8
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 8.1e-87 324.7 328 55.8
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 3.1e-86 322.8 328 55.8
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 5.3e-86 322.0 327 56.9
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 6.9e-86 321.6 327 56.3
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 2.6e-85 319.7 327 56.0
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 1.3e-84 317.4 439 46.7
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 6.4e-84 315.1 327 56.6
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.1e-83 314.3 328 55.2
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.1e-83 314.3 331 52.3
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 3.2e-83 312.8 327 55.7
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 3.2e-83 312.8 327 56.3
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 3.2e-83 312.8 327 55.7
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 3.2e-83 312.8 327 55.7
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 7.1e-83 311.6 327 54.4
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.2e-82 310.8 331 57.4
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 1.0e-81 307.8 325 55.7
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 6.6e-81 305.1 327 53.8
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 8.7e-81 304.7 327 55.7
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.1e-80 304.3 328 54.0
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.9e-80 303.5 327 53.8
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 5.6e-80 302.0 327 53.5
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.4e-78 297.4 330 53.0
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.8e-78 297.0 329 53.5
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 9.0e-78 294.7 327 54.7
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 6.7e-73 278.5 329 52.6
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 7.4e-72 275.0 348 50.0
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.8e-70 270.4 283 54.4
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.8e-65 253.8 282 51.4
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 2.5e-64 250.0 327 46.5
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 1.0e-60 238.0 331 44.1
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 1.7e-60 237.3 328 43.3
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.8e-54 217.2 240 54.2
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 4.1e-54 216.1 239 53.6
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 7.9e-50 201.8 226 52.2
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 2.2e-47 193.7 341 38.4
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 5.9e-45 185.7 221 50.2
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 4.4e-32 142.9 103 68.9
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 2.8e-31 140.2 105 65.7
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 4.1e-30 136.3 87 78.2
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.7e-28 131.0 103 62.1
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 4.0e-25 119.8 326 30.1
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 3.5e-21 106.7 393 27.0
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 2.0e-08 64.3 46 69.6
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.0e-08 64.3 47 59.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 4.4e-08 63.2 46 63.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 7.5e-08 62.4 46 60.9
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 5.4e-06 56.2 333 22.2


User provided reference genes

Program Settings