Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb258690 Zea mays HOM05D004486 ORTHO05D006329 2.2e-128 462.2 224 100.0
Zm00001eb062480 Zea mays HOM05D004486 ORTHO05D006329 2.4e-106 389.0 194 96.9
Os03g0819100 Oryza sativa ssp. japonica HOM05D004486 ORTHO05D006329 2.0e-100 369.4 194 90.7
Zm00001eb160290 Zea mays HOM05D004486 ORTHO05D006329 5.7e-92 341.3 165 99.4
Zm00001eb246100 Zea mays HOM05D004486 ORTHO05D006329 5.7e-92 341.3 166 98.8
Eucgr.J01127 Eucalyptus grandis HOM05D004486 ORTHO05D006329 8.6e-88 327.4 194 79.9
Hund19290 Selenicereus undatus HOM05D004486 ORTHO05D006329 1.5e-87 326.6 194 79.9
HPP92_015409 Vanilla planifolia HOM05D004486 ORTHO05D006329 3.6e-86 322.0 194 79.4
HPP92_026987 Vanilla planifolia HOM05D004486 ORTHO05D006329 3.6e-86 322.0 194 79.4
MBI05_g24466_MAGBIO Magnolia biondii HOM05D004486 ORTHO05D006329 1.4e-85 320.1 194 78.4
CSS0008191 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 1.8e-85 319.7 199 76.9
TAR369G0956 Trochodendron aralioides HOM05D004486 ORTHO05D006329 3.0e-85 318.9 194 77.8
CSS0049406 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 5.2e-85 318.2 199 76.4
PGR044G2316 Punica granatum HOM05D004486 ORTHO05D006329 6.8e-85 317.8 194 76.8
Ciclev10030974m.g Citrus clementina HOM05D004486 ORTHO05D006329 8.9e-85 317.4 194 77.8
Nitab4.5_0000561g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 8.9e-85 317.4 194 78.4
Atru.chr12.611 Acer truncatum HOM05D004486 ORTHO05D006329 1.2e-84 317.0 194 78.9
QL08p057259 Quercus lobata HOM05D004486 ORTHO05D006329 1.2e-84 317.0 194 77.8
Cfa001575 Carpinus fangiana HOM05D004486 ORTHO05D006329 2.0e-84 316.2 194 77.8
Dinv11819 Davidia involucrata HOM05D004486 ORTHO05D006329 2.6e-84 315.8 194 78.4
FAN06G4941 Fragaria x ananassa HOM05D004486 ORTHO05D006329 2.6e-84 315.8 194 75.8
Prupe.2G220700 Prunus persica HOM05D004486 ORTHO05D006329 2.6e-84 315.8 194 75.3
DCAR_006479 Daucus carota HOM05D004486 ORTHO05D006329 3.4e-84 315.5 198 76.3
Glyma.20G244100 Glycine max HOM05D004486 ORTHO05D006329 3.4e-84 315.5 191 76.4
Nn2g12957 Nelumbo nucifera HOM05D004486 ORTHO05D006329 3.4e-84 315.5 194 77.8
CANSAT11G2341 Cannabis sativa HOM05D004486 ORTHO05D006329 4.4e-84 315.1 200 75.0
FvH4_7g20511 Fragaria vesca HOM05D004486 ORTHO05D006329 4.4e-84 315.1 191 76.4
SalBow3G3918 Salvia bowleyana HOM05D004486 ORTHO05D006329 4.4e-84 315.1 194 76.3
GSVIVG01032649001 Vitis vinifera HOM05D004486 ORTHO05D006329 4.4e-84 315.1 194 76.3
EL10Ac2g03540 Beta vulgaris HOM05D004486 ORTHO05D006329 5.7e-84 314.7 194 75.8
CAN.G742.18 Capsicum annuum HOM05D004486 ORTHO05D006329 5.7e-84 314.7 194 77.3
Peaxi162Scf01024g00121 Petunia axillaris HOM05D004486 ORTHO05D006329 7.5e-84 314.3 194 77.8
Cc09_g02360 Coffea canephora HOM05D004486 ORTHO05D006329 1.3e-83 313.5 194 76.3
Manes.18G141033 Manihot esculenta HOM05D004486 ORTHO05D006329 1.3e-83 313.5 194 77.3
Nitab4.5_0000830g0030 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.3e-83 313.5 194 77.8
SGA_v2.0_scaffold71G24033 Striga asiatica HOM05D004486 ORTHO05D006329 1.3e-83 313.5 194 75.8
Hma1.2p1_2685F.1_g326910 Hydrangea macrophylla HOM05D004486 ORTHO05D006329 1.7e-83 313.2 194 76.8
Oeu016149.1 Olea europaea HOM05D004486 ORTHO05D006329 1.7e-83 313.2 189 77.2
Actinidia03014 Actinidia chinensis HOM05D004486 ORTHO05D006329 2.2e-83 312.8 194 77.8
Lj5g0008233 Lotus japonicus HOM05D004486 ORTHO05D006329 2.2e-83 312.8 194 75.8
Gohir.A13G021200 Gossypium hirsutum HOM05D004486 ORTHO05D006329 3.7e-83 312.0 194 76.8
MSTRG.8160 Avicennia marina HOM05D004486 ORTHO05D006329 4.9e-83 311.6 191 77.5
Cpa.g.sc1.280 Carica papaya HOM05D004486 ORTHO05D006329 4.9e-83 311.6 193 77.7
CiPaw.01G277900 Carya illinoinensis HOM05D004486 ORTHO05D006329 4.9e-83 311.6 194 75.8
Migut.F01788 Erythranthe guttata HOM05D004486 ORTHO05D006329 4.9e-83 311.6 194 76.3
AUR62036016 Chenopodium quinoa HOM05D004486 ORTHO05D006329 6.4e-83 311.2 194 75.8
Lalb_Chr21g0307511 Lupinus albus HOM05D004486 ORTHO05D006329 6.4e-83 311.2 194 74.7
PSO339G6713 Papaver somniferum HOM05D004486 ORTHO05D006329 6.4e-83 311.2 194 74.2
FAN01G2088 Fragaria x ananassa HOM05D004486 ORTHO05D006329 8.3e-83 310.8 191 74.3
Potri.008G045900 Populus trichocarpa HOM05D004486 ORTHO05D006329 8.3e-83 310.8 194 76.8
AUR62027896 Chenopodium quinoa HOM05D004486 ORTHO05D006329 1.1e-82 310.5 194 75.8
Phvul.007G005900 Phaseolus vulgaris HOM05D004486 ORTHO05D006329 1.1e-82 310.5 191 75.4
MSTRG.361 Avicennia marina HOM05D004486 ORTHO05D006329 1.4e-82 310.1 194 76.3
Manes.18G141037 Manihot esculenta HOM05D004486 ORTHO05D006329 1.4e-82 310.1 194 76.3
Medtr1g116230 Medicago truncatula HOM05D004486 ORTHO05D006329 1.4e-82 310.1 194 75.8
RcHm_v2.0_Chr1g0364401 Rosa chinensis HOM05D004486 ORTHO05D006329 1.4e-82 310.1 191 75.9
Sabra08G0032200 Salix brachista HOM05D004486 ORTHO05D006329 1.4e-82 310.1 194 76.3
MD07G1182000 Malus domestica HOM05D004486 ORTHO05D006329 1.8e-82 309.7 191 74.9
Eucgr.J01128 Eucalyptus grandis HOM05D004486 ORTHO05D006329 2.4e-82 309.3 196 74.5
HanXRQChr12g0367761 Helianthus annuus HOM05D004486 ORTHO05D006329 2.4e-82 309.3 194 76.8
FAN06G4255 Fragaria x ananassa HOM05D004486 ORTHO05D006329 3.2e-82 308.9 191 75.4
Gohir.D13G021700 Gossypium hirsutum HOM05D004486 ORTHO05D006329 3.2e-82 308.9 194 76.3
Gorai.013G024500 Gossypium raimondii HOM05D004486 ORTHO05D006329 3.2e-82 308.9 194 76.3
ECA233G4916 Erigeron canadensis HOM05D004486 ORTHO05D006329 5.4e-82 308.1 194 76.3
Lj8A94T45 Lonicera japonica HOM05D004486 ORTHO05D006329 5.4e-82 308.1 199 74.4
Peaxi162Scf01024g00123 Petunia axillaris HOM05D004486 ORTHO05D006329 5.4e-82 308.1 194 75.8
TWI38G2347 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 5.4e-82 308.1 194 75.8
VMungo0720G1168 Vigna mungo HOM05D004486 ORTHO05D006329 5.4e-82 308.1 196 75.0
VMungo0720G3071 Vigna mungo HOM05D004486 ORTHO05D006329 5.4e-82 308.1 191 75.9
vmacro07094 Vaccinium macrocarpon HOM05D004486 ORTHO05D006329 7.0e-82 307.8 190 76.8
FAN10G3892 Fragaria x ananassa HOM05D004486 ORTHO05D006329 9.2e-82 307.4 204 71.6
Nitab4.5_0000830g0050 Nicotiana tabacum HOM05D004486 ORTHO05D006329 9.2e-82 307.4 194 77.3
Manes.18G142200 Manihot esculenta HOM05D004486 ORTHO05D006329 1.2e-81 307.0 197 75.6
PSO384G2310 Papaver somniferum HOM05D004486 ORTHO05D006329 1.2e-81 307.0 194 73.7
Thhalv10012982m.g Eutrema salsugineum HOM05D004486 ORTHO05D006329 1.6e-81 306.6 199 73.4
Lsat_1_v5_gn_8_21161 Lactuca sativa HOM05D004486 ORTHO05D006329 1.6e-81 306.6 194 76.3
Rhsim12G0129400 Rhododendron simsii HOM05D004486 ORTHO05D006329 1.6e-81 306.6 191 76.4
Ah.10g033110 Amaranthus hybridus HOM05D004486 ORTHO05D006329 2.7e-81 305.8 194 74.2
PGSC0003DMG400028998 Solanum tuberosum HOM05D004486 ORTHO05D006329 2.7e-81 305.8 194 76.3
Potri.010G215700 Populus trichocarpa HOM05D004486 ORTHO05D006329 3.5e-81 305.4 194 76.3
C09p63580 Brassica napus HOM05D004486 ORTHO05D006329 4.6e-81 305.1 199 73.9
Ca_11379_v3 Cicer arietinum L. HOM05D004486 ORTHO05D006329 4.6e-81 305.1 194 73.2
TPR.G10423 Trifolium pratense HOM05D004486 ORTHO05D006329 4.6e-81 305.1 194 73.7
Duzib106G0308 Durio zibethinus HOM05D004486 ORTHO05D006329 7.8e-81 304.3 194 74.7
Solyc04g049720.4 Solanum lycopersicum HOM05D004486 ORTHO05D006329 7.8e-81 304.3 194 75.8
Psat6g239960 Pisum sativum HOM05D004486 ORTHO05D006329 1.0e-80 303.9 194 72.7
Sed0016157 Sechium edule HOM05D004486 ORTHO05D006329 1.0e-80 303.9 200 72.0
A10p24750 Brassica napus HOM05D004486 ORTHO05D006329 1.3e-80 303.5 199 73.4
MD01G1113900 Malus domestica HOM05D004486 ORTHO05D006329 1.3e-80 303.5 191 73.3
CDE04G1784 Ceratophyllum demersum HOM05D004486 ORTHO05D006329 1.7e-80 303.1 194 74.2
Aqoxy4G03158 Aquilegia oxysepala HOM05D004486 ORTHO05D006329 2.3e-80 302.8 199 73.4
MD01G1114100 Malus domestica HOM05D004486 ORTHO05D006329 2.3e-80 302.8 191 73.3
Sp6g30500 Schrenkiella parvula HOM05D004486 ORTHO05D006329 2.3e-80 302.8 199 72.4
BcaC04g19110 Brassica carinata HOM05D004486 ORTHO05D006329 3.0e-80 302.4 199 73.4
BolC9t59201H Brassica oleracea HOM05D004486 ORTHO05D006329 3.0e-80 302.4 199 73.4
BraA10t44538Z Brassica rapa HOM05D004486 ORTHO05D006329 3.0e-80 302.4 199 73.4
Thecc.10G065100 Theobroma cacao HOM05D004486 ORTHO05D006329 3.9e-80 302.0 194 74.2
BcaNung01890 Brassica carinata HOM05D004486 ORTHO05D006329 1.1e-79 300.4 199 72.9
Aa31sc127G20 Aethionema arabicum HOM05D004486 ORTHO05D006329 1.5e-79 300.1 199 73.4
THA.LOC104827314 Tarenaya hassleriana HOM05D004486 ORTHO05D006329 1.9e-79 299.7 201 73.1
Lj7A436T61 Lonicera japonica HOM05D004486 ORTHO05D006329 2.5e-79 299.3 199 72.9
Sopen04g019990 Solanum pennellii HOM05D004486 ORTHO05D006329 2.5e-79 299.3 194 75.3
arahy.Tifrunner.gnm1.ann1.GKFC1I Arachis hypogaea HOM05D004486 ORTHO05D006329 7.3e-79 297.7 194 72.2
arahy.Tifrunner.gnm1.ann1.Q6727A Arachis hypogaea HOM05D004486 ORTHO05D006329 7.3e-79 297.7 194 72.2
BcaNung01146 Brassica carinata HOM05D004486 ORTHO05D006329 1.2e-78 297.0 199 71.9
A02p02010 Brassica napus HOM05D004486 ORTHO05D006329 1.2e-78 297.0 199 72.4
Sabra10G0166800 Salix brachista HOM05D004486 ORTHO05D006329 1.2e-78 297.0 194 73.2
BolC2t06563H Brassica oleracea HOM05D004486 ORTHO05D006329 2.1e-78 296.2 196 72.4
BraA02t05173Z Brassica rapa HOM05D004486 ORTHO05D006329 2.1e-78 296.2 199 71.9
Carub.0006s1168 Capsella rubella HOM05D004486 ORTHO05D006329 2.1e-78 296.2 199 71.9
TWI38G1612 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 2.8e-78 295.8 194 71.6
ECA233G5280 Erigeron canadensis HOM05D004486 ORTHO05D006329 3.6e-78 295.4 183 76.0
AT5G13520 Arabidopsis thaliana HOM05D004486 ORTHO05D006329 8.0e-78 294.3 199 71.9
AL6G24140 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.0e-77 293.9 199 71.4
CsaV3_5G026050 Cucumis sativus L. HOM05D004486 ORTHO05D006329 5.2e-77 291.6 200 66.0
MELO3C025494.2 Cucumis melo HOM05D004486 ORTHO05D006329 8.9e-77 290.8 200 66.5
CSS0021534 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 1.2e-76 290.4 194 72.7
C02p06220 Brassica napus HOM05D004486 ORTHO05D006329 1.5e-76 290.0 200 71.0
unitig_60.g25720 Utricularia gibba HOM05D004486 ORTHO05D006329 1.5e-76 290.0 194 72.2
SEGI_01278 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 4.4e-76 288.5 200 65.5
CARHR199920 Cardamine hirsuta HOM05D004486 ORTHO05D006329 3.2e-74 282.3 199 69.3
AL6G23300 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.2e-73 280.4 199 68.8
AL6G23330 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.2e-73 280.4 199 68.8
Haze_16953 Corylus avellana HOM05D004486 ORTHO05D006329 2.3e-72 276.2 167 78.4
Zm00001eb103910 Zea mays HOM05D004486 ORTHO05D006329 1.2e-70 270.4 131 97.7
SEGI_27690 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 8.3e-67 257.7 192 61.5
Nitab4.5_0005262g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 3.4e-60 235.7 194 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2493 Anthoceros agrestis HOM05D004486 ORTHO05D006329 1.1e-58 230.7 197 54.8
Mapoly0007s0135 Marchantia polymorpha HOM05D004486 ORTHO05D006329 4.1e-58 228.8 194 54.6
CBR_g45218 Chara braunii HOM05D004486 ORTHO05D006329 5.4e-50 201.8 191 49.7
SMO356G0749 Selaginella moellendorffii HOM05D004486 ORTHO05D006329 1.2e-49 200.7 201 48.3
ClCG09G020360 Citrullus lanatus HOM05D004486 ORTHO05D006329 8.1e-46 188.0 194 49.0
Duzib128G1554 Durio zibethinus HOM05D004486 ORTHO05D006329 2.7e-33 146.4 82 80.5
unitig_0.g185 Utricularia gibba HOM05D004486 ORTHO05D006329 1.3e-32 144.1 182 44.5
Actinidia38236 Actinidia chinensis HOM05D004486 ORTHO05D006329 2.6e-28 129.8 79 77.2
Cfa024826 Carpinus fangiana HOM05D004486 ORTHO05D006329 1.3e-22 110.9 202 32.7
Cre13.g585900 Chlamydomonas reinhardtii HOM05D004486 ORTHO05D006329 7.6e-20 101.7 198 32.8
MCO01G623 Micromonas commoda HOM05D004486 ORTHO05D006329 2.8e-14 83.2 151 31.8
PRCOL_00006050 Prasinoderma coloniale HOM05D004486 ORTHO05D006329 3.7e-14 82.8 139 31.7
Nn8g39313 Nelumbo nucifera HOM05D004486 ORTHO05D006329 8.2e-14 81.6 188 31.4
Nitab4.5_0001155g0060 Nicotiana tabacum HOM05D011506 ORTHO05D014242 2.4e-13 80.1 46 84.8
Haze_22492 Corylus avellana HOM05D000583 ORTHO05D000442 3.1e-13 79.7 50 72.0


User provided reference genes

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