Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 0.0e+00 1286.9 653 100.0
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.7e-261 906.0 626 74.6
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 1.4e-178 630.6 637 55.1
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 3.0e-173 612.8 646 54.0
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 5.1e-173 612.1 647 53.3
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.1e-172 610.9 639 52.1
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 5.6e-172 608.6 643 52.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 6.2e-171 605.1 647 51.8
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.1e-170 604.4 637 53.4
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 3.1e-170 602.8 648 51.5
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.0e-170 602.4 632 51.1
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 2.0e-169 600.1 646 53.3
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 4.9e-168 595.5 641 53.7
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.2e-167 592.8 640 53.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 4.2e-167 592.4 640 53.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 2.7e-166 589.7 649 51.8
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.7e-166 589.7 639 52.7
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 7.8e-166 588.2 636 52.4
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 7.8e-166 588.2 644 50.9
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 1.3e-165 587.4 637 52.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.3e-165 586.6 630 52.1
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 3.0e-165 586.3 640 52.7
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.1e-164 584.3 658 51.7
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.5e-164 583.2 629 51.5
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 3.3e-164 582.8 640 51.7
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 5.6e-164 582.0 647 51.6
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.6e-163 580.5 647 51.6
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 2.8e-163 579.7 629 51.8
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.6e-163 579.3 633 51.2
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.6e-163 579.3 627 51.2
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.6e-163 579.3 643 51.9
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 4.8e-163 578.9 631 51.8
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 6.2e-163 578.6 638 51.6
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 8.1e-163 578.2 640 51.6
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 8.1e-163 578.2 630 50.8
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.1e-162 577.8 626 52.2
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.1e-162 577.8 637 51.2
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.8e-162 577.0 630 51.9
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-162 576.6 631 51.2
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.1e-162 576.2 666 50.0
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 3.1e-162 576.2 646 50.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 6.9e-162 575.1 630 51.0
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 6.9e-162 575.1 638 50.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 9.0e-162 574.7 633 51.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.0e-161 573.5 640 50.9
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 2.6e-161 573.2 630 51.6
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 2.6e-161 573.2 630 51.6
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.6e-161 573.2 647 50.5
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.6e-161 573.2 639 51.6
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.6e-161 573.2 628 51.9
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 4.5e-161 572.4 641 50.7
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 5.8e-161 572.0 642 52.0
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.6e-161 571.6 644 50.6
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 9.9e-161 571.2 648 50.3
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 2.2e-160 570.1 575 54.6
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.9e-160 569.7 678 49.0
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 6.4e-160 568.5 638 50.6
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 6.4e-160 568.5 628 51.1
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.4e-160 568.5 639 50.2
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.4e-160 568.5 649 49.9
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 2.4e-159 566.6 628 51.1
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.2e-159 566.2 642 50.0
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.2e-159 566.2 641 51.3
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 4.2e-159 565.8 633 50.1
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 4.2e-159 565.8 633 50.6
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 7.1e-159 565.1 646 50.9
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 7.1e-159 565.1 651 49.5
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 9.3e-159 564.7 646 50.9
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 1.2e-158 564.3 636 50.6
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.6e-158 563.9 636 50.2
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.1e-158 563.5 635 50.4
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 2.1e-158 563.5 646 50.5
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 2.7e-158 563.1 638 51.3
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 3.5e-158 562.8 625 51.0
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 4.6e-158 562.4 643 49.9
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 6.0e-158 562.0 633 51.3
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.0e-157 561.2 642 50.2
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.8e-157 560.5 645 49.1
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 3.9e-157 559.3 639 49.5
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 5.1e-157 558.9 637 50.1
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.9e-156 557.0 640 49.4
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 3.3e-156 556.2 629 49.0
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 5.6e-156 555.4 641 50.2
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.6e-156 555.4 639 49.3
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.3e-155 554.3 580 52.9
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.8e-155 553.1 697 47.6
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 3.7e-155 552.7 629 49.3
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.2e-155 552.0 642 49.1
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 9.0e-154 548.1 639 50.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-153 547.4 640 50.3
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.0e-152 544.7 640 49.5
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.9e-151 540.4 631 49.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 3.0e-149 533.1 574 53.0
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 3.9e-149 532.7 568 53.5
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.5e-145 520.8 484 57.9
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 5.1e-141 505.8 716 43.9
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 1.2e-137 494.6 590 49.3
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.4e-137 493.0 636 46.1
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 6.7e-133 478.8 657 45.1
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 6.7e-133 478.8 628 46.0
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.4e-129 466.5 555 47.4
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 8.5e-128 461.8 474 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 4.7e-126 456.1 681 43.0
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.4e-124 449.5 639 44.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.4e-122 443.7 628 41.9
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-114 417.5 641 42.0
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 3.1e-114 416.8 637 42.2
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 2.9e-112 410.2 635 42.0
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 4.2e-111 406.4 653 40.3
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 8.0e-110 402.1 503 45.7
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 4.4e-108 396.4 894 34.0
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.4e-108 396.4 435 50.1
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 2.2e-107 394.0 347 60.8
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.4e-106 390.6 527 45.2
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 4.1e-106 389.8 495 45.7
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 6.3e-99 365.9 631 39.3
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.0e-81 307.8 397 46.1
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.0e-80 305.4 349 50.1
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.0e-77 293.5 285 52.6
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.1e-61 242.3 369 39.8
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 1.1e-55 222.2 410 35.9
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.2e-54 216.5 226 48.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.2e-54 216.5 226 48.7
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 2.6e-52 211.1 645 29.0
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 4.5e-44 183.7 612 27.3
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.1e-34 152.5 146 55.5
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.3e-27 129.0 160 46.9
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 5.7e-23 113.6 455 25.5
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 2.3e-16 91.7 56 80.4
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 2.0e-15 88.6 186 32.3
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 3.1e-13 81.3 57 68.4
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.3e-11 75.9 99 40.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 8.5e-11 73.2 60 60.0


User provided reference genes

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