Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 3211.4 1612 100.0
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 2166.7 1633 66.6
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 2139.0 1615 66.6
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 2113.6 1631 65.5
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2111.3 1625 65.6
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 2108.6 1633 65.6
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 2108.6 1707 63.6
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2108.2 1625 65.6
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 2103.2 1635 65.3
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 2102.4 1631 64.8
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 2102.0 1618 65.9
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 2101.2 1620 65.9
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 2099.7 1620 66.2
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 2099.3 1632 65.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 2097.8 1629 65.3
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 2097.0 1627 65.3
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 2095.5 1613 65.3
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 2095.1 1635 65.1
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 2092.8 1605 65.7
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 2092.4 1631 64.7
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 2092.4 1657 64.5
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 2089.3 1634 64.9
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 2085.5 1633 64.8
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 2085.5 1630 65.0
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 2082.4 1620 64.9
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 2081.2 1627 65.6
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 2079.7 1628 65.0
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2078.1 1631 64.4
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 2077.0 1627 65.3
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 2072.0 1625 64.7
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 2069.3 1678 64.3
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 2063.5 1630 65.2
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 2060.0 1620 64.7
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 2059.3 1596 65.6
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 2058.5 1633 64.8
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 2057.7 1634 63.5
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 2057.0 1593 65.5
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 2053.1 1620 64.2
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 2050.4 1616 64.8
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 2049.6 1619 65.0
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 2047.3 1746 61.5
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 2044.6 1630 63.9
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 2042.7 1656 63.9
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2041.5 1696 62.0
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 2041.2 1639 63.7
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 2040.4 1638 63.7
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 2035.8 1622 64.2
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 2030.4 1620 64.5
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2028.4 1627 64.1
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 2028.4 1594 64.8
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 2020.7 1620 64.0
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 2020.7 1622 63.6
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 2010.3 1618 63.5
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 2009.2 1600 64.2
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2008.4 1631 62.9
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 2003.4 1618 63.6
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 2001.9 1638 63.3
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 2001.1 1623 62.6
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1996.1 1585 64.1
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1994.9 1616 62.4
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1991.9 1628 62.2
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1988.4 1621 62.2
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1986.5 1636 62.0
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1986.5 1630 62.7
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1985.3 1638 62.0
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1983.4 1619 62.4
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1981.5 1791 59.1
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1979.1 1600 63.3
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1973.7 1591 63.8
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1970.3 1591 63.6
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1969.5 1641 61.5
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1969.1 1640 61.6
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1962.2 1650 61.0
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1962.2 1609 62.7
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1961.0 1622 61.8
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1961.0 1629 61.3
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1956.4 1626 62.5
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1954.1 1614 61.8
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1944.9 1586 63.2
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1935.2 1611 61.3
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1926.0 1812 57.7
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1913.7 1628 61.1
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1879.4 1615 60.9
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1877.8 1693 58.7
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1870.1 1532 62.7
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1865.5 1641 60.2
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1864.4 1648 59.3
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1856.6 1647 59.1
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 0.0e+00 1855.1 1591 59.8
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1847.0 1671 58.0
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1784.6 1325 67.7
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 0.0e+00 1763.4 1644 57.8
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1723.8 1307 66.4
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1689.9 1615 55.9
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 0.0e+00 1646.3 1630 53.4
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1630.9 1625 54.3
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 0.0e+00 1587.4 1612 52.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 0.0e+00 1570.8 1658 52.1
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1510.7 1315 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 0.0e+00 1469.5 1500 51.7
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1453.3 1585 51.4
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 0.0e+00 1366.7 1740 45.5
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1359.7 1477 51.3
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1346.6 1049 64.7
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1330.9 1099 62.8
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1131.7 944 62.3
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.8e-296 1023.5 909 58.7
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 3.4e-287 992.6 1226 47.1
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 6.0e-284 981.9 706 69.4
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.5e-282 977.2 1045 52.4
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 7.9e-268 928.3 609 74.9
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 8.5e-262 908.3 1001 49.7
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 1.9e-258 897.1 1687 36.2
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.2e-255 887.9 543 84.0
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-239 834.3 534 75.8
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 4.1e-232 809.7 711 58.8
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 5.9e-223 779.2 887 49.0
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 7.0e-216 755.7 1723 31.6
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 4.1e-200 703.4 623 59.2
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 4.3e-197 693.3 549 65.4
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 4.4e-186 656.8 734 48.6
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.3e-185 655.2 1651 31.2
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 3.2e-176 624.0 1564 31.1
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 3.0e-150 537.7 313 79.9
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 7.4e-141 506.5 283 83.0
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.5e-136 491.5 283 79.9
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 7.4e-133 479.9 1789 26.6
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.4e-131 474.9 252 87.3
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.9e-128 465.3 243 90.9
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 1.6e-119 435.6 254 79.9
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 7.0e-115 420.2 315 67.0
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 1.6e-111 409.1 538 43.7
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.2e-98 366.3 251 72.5
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 6.6e-97 360.5 250 69.2
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 2.5e-96 358.6 329 55.6
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 8.9e-86 323.6 314 54.8
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.8e-78 299.3 207 70.0
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 6.6e-65 254.2 208 61.5
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 2.3e-49 202.6 118 83.9
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 1.8e-46 193.0 280 41.8
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-43 183.0 103 81.6
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 1.8e-38 166.4 110 74.5
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 2.4e-38 166.0 177 50.3
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 2.0e-37 162.9 105 73.3
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 5.8e-37 161.4 85 84.7
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 1.4e-35 156.8 145 51.0
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 3.2e-35 155.6 109 68.8
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.1e-34 152.9 109 67.9
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 6.9e-30 137.9 76 80.3
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 2.6e-29 136.0 136 53.7
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 2.6e-29 136.0 136 53.7
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 7.2e-27 127.9 150 44.7
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.6e-26 126.7 119 55.5
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 5.1e-25 121.7 97 63.9
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 8.2e-23 114.4 114 50.0
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 2.4e-22 112.8 140 43.6
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 5.3e-22 111.7 54 88.9
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 6.9e-22 111.3 60 78.3
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 6.7e-17 94.7 114 46.5
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.0e-16 93.2 95 51.6
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.6e-16 92.8 93 51.6
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.6e-16 92.8 93 51.6
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.3e-16 92.4 93 51.6
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 4.4e-16 92.0 66 63.6
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.7e-16 91.7 85 56.5
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.7e-16 91.7 93 52.7
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 9.7e-16 90.9 125 40.8
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 9.7e-16 90.9 144 37.5
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-15 89.7 93 51.6
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-15 89.7 93 51.6
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 3.7e-15 89.0 57 71.9
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.3e-15 88.2 93 50.5
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 1.4e-14 87.0 48 79.2
VMungo0251G1240 Vigna mungo HOM05D000087 ORTHO05D012327 5.3e-14 85.1 85 51.8
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 4.5e-13 82.0 113 40.7
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 5.0e-12 78.6 205 29.8
DCAR_010218 Daucus carota HOM05D003697 ORTHO05D043544 6.1e-10 71.6 180 30.0
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 2.3e-09 69.7 36 80.6
Lalb_Chr20g0123541 Lupinus albus HOM05D003697 ORTHO05D005452 8.8e-09 67.8 56 55.4
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 2.8e-07 62.8 31 83.9
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 2.8e-07 62.8 31 83.9
Lalb_Chr23g0273611 Lupinus albus HOM05D003697 ORTHO05D005452 5.3e-06 58.5 47 63.8
SEGI_14626 Sequoiadendron giganteum HOM05D003697 ORTHO05D012276 5.3e-06 58.5 42 61.9
SEGI_31193 Sequoiadendron giganteum HOM05D000279 ORTHO05D012276 5.3e-06 58.5 42 61.9


User provided reference genes

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