Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 5.8e-88 327.8 197 100.0
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 2.5e-59 232.6 202 67.8
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 2.2e-34 149.8 173 45.7
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 2.8e-34 149.4 195 51.3
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 4.8e-34 148.7 180 44.4
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 2.4e-33 146.4 175 49.7
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 3.1e-33 146.0 173 62.4
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 5.3e-33 145.2 186 47.3
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 5.3e-33 145.2 173 48.6
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.0e-33 144.4 173 61.8
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.2e-32 144.1 173 61.8
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 1.5e-32 143.7 190 50.5
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 2.0e-32 143.3 173 61.8
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 3.4e-32 142.5 184 47.3
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 3.4e-32 142.5 179 46.9
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 4.5e-32 142.1 172 47.1
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 4.5e-32 142.1 180 47.2
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 5.9e-32 141.7 173 57.2
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 7.7e-32 141.4 180 46.7
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 1.0e-31 141.0 181 46.4
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.3e-31 140.6 196 44.4
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 1.7e-31 140.2 172 55.8
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 1.7e-31 140.2 170 47.6
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 1.7e-31 140.2 174 47.7
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 2.2e-31 139.8 189 54.0
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 2.9e-31 139.4 177 47.5
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 2.9e-31 139.4 197 44.2
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 5.0e-31 138.7 173 47.4
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 5.0e-31 138.7 175 48.6
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 5.0e-31 138.7 173 59.5
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 6.5e-31 138.3 176 45.5
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 6.5e-31 138.3 201 44.8
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 6.5e-31 138.3 181 53.6
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 8.5e-31 137.9 173 47.4
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 1.1e-30 137.5 198 51.0
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 1.4e-30 137.1 178 46.6
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 1.4e-30 137.1 174 44.3
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.9e-30 136.7 175 47.4
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 2.5e-30 136.3 176 43.8
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 2.5e-30 136.3 179 45.3
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 3.2e-30 136.0 183 45.4
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 3.2e-30 136.0 175 46.9
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 3.2e-30 136.0 179 46.4
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 4.2e-30 135.6 173 52.0
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 4.2e-30 135.6 172 46.5
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 4.2e-30 135.6 172 47.1
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 5.5e-30 135.2 181 47.0
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 7.2e-30 134.8 175 46.3
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 7.2e-30 134.8 173 53.8
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 9.4e-30 134.4 172 58.7
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.2e-29 134.0 174 54.6
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 1.2e-29 134.0 197 55.8
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.2e-29 134.0 182 44.0
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 1.6e-29 133.7 174 47.7
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 1.6e-29 133.7 187 42.2
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 2.1e-29 133.3 174 47.7
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.1e-29 133.3 178 54.5
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 2.7e-29 132.9 175 45.7
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 2.7e-29 132.9 176 46.0
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 2.7e-29 132.9 172 45.9
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 2.7e-29 132.9 177 52.0
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 3.6e-29 132.5 195 46.2
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 3.6e-29 132.5 172 47.7
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 4.6e-29 132.1 177 45.2
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 4.6e-29 132.1 172 47.7
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 4.6e-29 132.1 172 47.7
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 6.1e-29 131.7 181 47.0
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 6.1e-29 131.7 198 44.9
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 6.1e-29 131.7 202 46.0
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 6.1e-29 131.7 175 45.7
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 6.1e-29 131.7 173 55.5
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 1.0e-28 131.0 181 43.1
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 1.0e-28 131.0 206 42.2
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 1.0e-28 131.0 173 48.6
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 1.4e-28 130.6 198 42.9
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 1.4e-28 130.6 183 45.4
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 1.8e-28 130.2 173 50.9
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 3.9e-28 129.0 169 55.0
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 3.9e-28 129.0 180 42.8
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 6.7e-28 128.3 174 51.1
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 6.7e-28 128.3 172 43.6
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 8.8e-28 127.9 173 47.4
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 8.8e-28 127.9 173 45.7
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.1e-27 127.5 171 42.7
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 2.0e-27 126.7 189 41.3
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.5e-27 126.3 172 45.3
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.5e-27 126.3 172 45.3
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 2.5e-27 126.3 181 44.8
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 2.5e-27 126.3 171 44.4
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 3.3e-27 125.9 174 51.1
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 3.3e-27 125.9 198 43.4
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 5.7e-27 125.2 184 38.6
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 5.7e-27 125.2 173 45.1
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 7.4e-27 124.8 180 40.0
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 7.4e-27 124.8 184 42.4
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 9.7e-27 124.4 168 45.2
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.3e-26 124.0 173 41.6
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 2.8e-26 122.9 177 43.5
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 4.8e-26 122.1 172 55.2
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 6.3e-26 121.7 177 52.0
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 8.2e-26 121.3 172 43.6
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 8.2e-26 121.3 194 40.2
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 8.2e-26 121.3 106 60.4
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 1.1e-25 120.9 170 44.7
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 1.4e-25 120.6 182 54.4
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 1.4e-25 120.6 183 54.1
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 1.8e-25 120.2 185 48.1
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 3.1e-25 119.4 104 57.7
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 5.3e-25 118.6 190 42.6
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 6.9e-25 118.2 183 40.4
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 1.2e-24 117.5 97 60.8
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 1.2e-24 117.5 101 64.4
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 2.0e-24 116.7 172 45.3
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 2.6e-24 116.3 181 38.7
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 4.5e-24 115.5 185 36.8
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 4.5e-24 115.5 204 45.6
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 7.7e-24 114.8 171 48.5
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.7e-23 113.6 180 42.2
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 2.2e-23 113.2 185 35.7
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 2.2e-23 113.2 199 41.7
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 2.2e-23 113.2 170 40.6
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 2.2e-23 113.2 186 40.3
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 2.9e-23 112.8 181 37.6
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 3.8e-23 112.5 179 38.0
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 5.0e-23 112.1 178 37.1
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 5.0e-23 112.1 166 44.0
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 6.5e-23 111.7 185 36.8
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 8.5e-23 111.3 178 38.2
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.1e-22 110.9 106 52.8
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 1.1e-22 110.9 170 42.4
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 3.2e-22 109.4 196 37.2
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 3.2e-22 109.4 181 39.2
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 4.2e-22 109.0 173 45.7
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 4.2e-22 109.0 195 45.1
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 5.5e-22 108.6 184 37.0
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 5.5e-22 108.6 173 38.2
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 6.1e-21 105.1 175 38.9
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 2.3e-20 103.2 176 37.5
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 2.3e-20 103.2 174 35.1
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 3.9e-20 102.4 174 35.1
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 6.7e-20 101.7 193 38.9
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 2.6e-19 99.8 173 37.6
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 3.3e-19 99.4 185 34.6
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 5.7e-19 98.6 234 31.6
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 2.8e-18 96.3 182 35.7
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 4.8e-18 95.5 169 37.3
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 4.8e-18 95.5 175 36.6
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 8.2e-18 94.7 102 45.1
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 3.1e-17 92.8 98 54.1
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 3.1e-17 92.8 173 37.6
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 4.1e-17 92.4 183 35.5
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 1.2e-16 90.9 205 35.6
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 2.0e-16 90.1 176 32.4
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 8.5e-15 84.7 177 33.9
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 3.9e-12 75.9 177 29.9
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 8.8e-12 74.7 187 29.4
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 5.7e-11 72.0 108 39.8
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 3.7e-10 69.3 104 40.4
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 9.1e-09 64.7 110 40.9
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 7.7e-08 61.6 106 35.8
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 5.5e-06 55.5 58 48.3


User provided reference genes

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