Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 6.3e-194 680.6 355 100.0
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.2e-121 439.1 345 65.8
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 6.0e-120 434.9 356 64.0
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 7.9e-120 434.5 354 65.0
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.3e-119 433.7 328 68.0
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 2.3e-119 433.0 343 65.0
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 8.7e-119 431.0 344 64.5
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.5e-118 430.3 347 64.6
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 1.5e-118 430.3 354 64.1
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.5e-118 429.5 333 66.4
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 9.6e-118 427.6 352 63.9
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.8e-117 426.0 347 64.0
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 3.7e-117 425.6 348 64.4
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 3.7e-117 425.6 347 66.6
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 6.2e-117 424.9 351 63.5
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 5.3e-116 421.8 342 63.5
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 5.3e-116 421.8 353 65.2
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.0e-115 419.9 347 64.8
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 5.8e-115 418.3 344 63.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.0e-114 417.5 349 65.0
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.2e-114 416.4 336 64.0
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 3.8e-114 415.6 347 63.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.9e-114 415.2 327 66.1
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 4.9e-114 415.2 327 66.4
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-113 414.1 345 63.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 1.4e-113 413.7 342 64.0
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.5e-113 412.9 349 63.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.7e-112 409.5 355 62.0
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.8e-111 406.8 344 63.1
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 3.9e-111 405.6 329 64.1
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 8.7e-111 404.4 353 62.9
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 3.7e-109 399.1 342 61.4
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 6.3e-109 398.3 340 62.4
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.1e-108 397.5 335 60.6
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.4e-108 397.1 364 58.8
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 4.1e-108 395.6 330 62.1
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.2e-107 394.0 346 61.0
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.0e-107 393.3 338 60.9
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.4e-107 392.5 337 62.3
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.5e-107 392.1 346 60.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 5.9e-107 391.7 327 61.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-107 391.7 327 61.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.9e-107 391.7 327 61.8
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 5.9e-107 391.7 336 62.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 7.7e-107 391.3 327 61.5
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.9e-106 389.4 346 59.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 3.8e-106 389.0 345 60.3
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 6.5e-106 388.3 355 59.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 6.5e-106 388.3 333 62.8
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.1e-105 387.5 347 59.9
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.1e-105 387.5 333 62.2
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.9e-105 386.7 423 52.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 2.5e-105 386.3 333 62.2
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.5e-105 386.3 329 62.0
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 3.2e-105 386.0 339 60.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.2e-105 385.6 333 62.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.2e-105 385.6 356 59.3
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 5.5e-105 385.2 326 60.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.2e-104 384.0 343 59.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.2e-104 384.0 343 59.5
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.6e-104 383.6 356 58.7
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.6e-104 382.1 328 61.3
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 4.6e-104 382.1 339 61.1
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.8e-103 380.2 347 58.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 5.1e-103 378.6 335 60.0
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 8.8e-103 377.9 339 59.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 8.8e-103 377.9 329 60.2
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.3e-102 375.9 341 59.8
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 7.4e-102 374.8 303 64.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 2.2e-101 373.2 303 66.3
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 3.7e-101 372.5 335 58.8
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 8.2e-101 371.3 340 57.6
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.1e-100 370.9 347 58.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.8e-100 370.2 347 59.4
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.4e-100 369.8 338 58.9
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 6.9e-100 368.2 291 67.0
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.1e-100 367.9 327 59.9
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.2e-99 367.5 347 57.3
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.6e-99 366.3 343 59.2
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.3e-98 364.0 348 56.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 2.2e-98 363.2 383 54.8
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 8.5e-98 361.3 347 56.5
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.1e-97 360.9 354 57.3
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.4e-97 360.5 328 62.2
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 5.5e-97 358.6 345 58.3
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.5e-94 350.5 322 60.6
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.6e-94 349.7 290 63.4
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 3.3e-94 349.4 327 58.1
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 4.4e-94 349.0 349 57.3
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 7.4e-94 348.2 325 57.8
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.8e-92 343.6 293 62.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 7.7e-91 338.2 294 62.6
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 2.5e-89 333.2 354 53.1
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.2e-88 330.9 328 56.7
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 2.7e-88 329.7 270 64.8
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 6.1e-88 328.6 280 62.1
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.7e-85 320.5 334 53.9
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.2e-85 320.1 369 53.1
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 3.7e-85 319.3 343 53.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.7e-85 319.3 342 53.5
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.1e-84 316.2 302 58.3
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.3e-82 310.8 409 49.1
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.8e-82 309.3 428 45.8
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 7.2e-81 305.1 271 60.9
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.1e-80 303.5 397 47.1
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 4.8e-77 292.4 265 58.5
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 3.1e-76 289.7 228 68.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.7e-75 285.0 398 45.5
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.7e-74 283.9 235 64.3
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 2.9e-74 283.1 386 48.2
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.1e-73 281.2 338 48.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.2e-73 279.6 246 61.4
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 7.5e-70 268.5 253 58.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.8e-68 263.8 244 60.2
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.2e-67 261.2 302 50.7
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 2.0e-67 260.4 322 44.4
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 7.7e-67 258.5 233 57.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 4.7e-64 249.2 329 45.9
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 4.1e-60 236.1 326 40.8
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 4.5e-59 232.6 276 52.9
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 8.6e-58 228.4 198 58.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 9.5e-57 224.9 177 68.4
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 4.9e-53 212.6 227 50.7
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 8.3e-53 211.8 228 50.0
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.1e-47 193.4 195 54.4
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 3.7e-45 186.4 142 71.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 7.3e-41 172.2 168 59.5
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.8e-40 170.2 145 62.8
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 6.4e-37 159.1 152 53.9
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 6.6e-34 149.1 327 33.0
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.1e-33 148.3 134 59.0
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.4e-30 136.7 92 76.1
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.8e-29 133.3 101 68.3
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.9e-25 120.9 122 58.2
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 6.4e-21 105.9 78 67.9
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.1e-20 105.1 217 33.6
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 1.1e-17 95.1 107 53.3
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 2.6e-14 84.0 166 39.8
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 7.6e-14 82.4 59 67.8
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 4.9e-13 79.7 84 46.4
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 9.3e-12 75.5 52 71.2
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 4.6e-11 73.2 78 50.0
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.8e-10 71.2 70 55.7
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 5.6e-09 66.2 53 66.0
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.2e-08 62.8 50 54.0
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 4.0e-07 60.1 74 50.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 3.4e-06 57.0 54 46.3


User provided reference genes

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