Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.4e-292 1007.7 533 100.0
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.2e-289 999.2 533 98.9
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 7.7e-220 767.3 483 85.1
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 8.6e-195 684.1 537 69.8
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 5.6e-170 601.7 525 63.4
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 8.1e-169 597.8 437 71.4
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.1e-168 597.4 527 62.2
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.4e-168 597.0 549 61.6
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.8e-168 596.7 538 63.2
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.2e-167 594.0 515 63.7
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.5e-167 593.6 506 63.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.5e-167 593.6 512 62.9
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.5e-167 593.6 521 61.8
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.5e-167 593.6 551 63.0
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 2.0e-167 593.2 519 62.6
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 5.8e-167 591.7 468 68.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 9.9e-167 590.9 493 64.9
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.3e-166 590.5 449 70.2
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.7e-166 590.1 518 63.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.2e-166 589.7 473 67.0
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 2.2e-166 589.7 521 62.0
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 4.9e-166 588.6 556 63.5
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 4.9e-166 588.6 512 62.9
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.1e-165 587.4 436 71.6
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.1e-165 587.4 503 65.2
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.1e-165 587.4 496 65.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.4e-165 586.3 555 62.3
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 5.4e-165 585.1 523 62.7
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 7.1e-165 584.7 543 62.2
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 7.1e-165 584.7 498 64.7
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 2.1e-164 583.2 422 70.9
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 2.1e-164 583.2 519 61.7
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 2.1e-164 583.2 502 64.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.7e-164 582.8 529 63.5
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 4.6e-164 582.0 528 61.4
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 6.0e-164 581.6 532 60.7
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 6.0e-164 581.6 456 67.5
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 7.8e-164 581.3 557 60.7
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.0e-163 580.9 530 61.7
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 1.0e-163 580.9 504 63.7
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.3e-163 580.5 511 63.8
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.3e-163 580.5 500 62.8
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.0e-163 579.3 559 61.9
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 3.9e-163 578.9 519 61.5
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 3.9e-163 578.9 489 64.6
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 8.7e-163 577.8 438 68.5
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 8.7e-163 577.8 482 65.1
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.1e-162 577.4 536 61.4
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 1.1e-162 577.4 466 66.1
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 4.3e-162 575.5 566 62.7
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 5.6e-162 575.1 519 61.8
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 7.3e-162 574.7 541 60.8
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 9.6e-162 574.3 548 61.1
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 9.6e-162 574.3 551 61.3
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-161 573.9 520 60.4
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-161 573.5 482 63.3
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 2.8e-161 572.8 481 64.4
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.8e-161 572.8 517 61.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 3.6e-161 572.4 471 66.5
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 3.6e-161 572.4 549 59.2
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 4.8e-161 572.0 544 60.7
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 6.2e-161 571.6 544 62.1
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 8.1e-161 571.2 533 59.8
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.0e-160 568.9 425 69.6
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.0e-160 568.9 425 69.6
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 5.3e-160 568.5 566 59.5
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 6.9e-160 568.2 539 62.5
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 9.0e-160 567.8 494 62.8
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.2e-159 567.4 547 62.5
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 2.0e-159 566.6 497 63.2
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 2.6e-159 566.2 441 68.0
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.6e-159 566.2 432 68.3
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 4.4e-159 565.5 363 78.0
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 4.4e-159 565.5 504 61.9
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 7.6e-159 564.7 458 65.7
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.3e-158 563.9 484 64.9
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 3.8e-158 562.4 502 62.7
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.9e-157 560.1 541 61.2
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.4e-157 559.7 494 62.8
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.4e-157 559.7 511 61.3
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.4e-157 559.7 494 62.3
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 3.2e-157 559.3 508 61.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.2e-156 557.4 541 56.6
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.1e-156 556.6 501 61.5
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.1e-156 556.6 512 61.3
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 6.0e-156 555.1 500 61.6
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 7.8e-156 554.7 425 67.5
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.0e-155 554.3 562 56.8
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.0e-155 552.7 490 61.4
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 6.6e-155 551.6 517 59.0
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.1e-154 550.8 517 61.9
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-154 550.8 508 61.0
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.5e-154 550.4 540 61.1
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.5e-154 549.7 427 66.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.1e-153 546.6 511 60.1
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 6.2e-153 545.0 540 60.6
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 4.5e-151 538.9 514 59.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 7.6e-151 538.1 517 58.0
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.2e-150 536.6 554 58.5
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.9e-150 536.2 529 58.8
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 9.3e-149 531.2 475 61.3
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 5.1e-147 525.4 516 58.5
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.9e-146 523.5 480 60.2
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.2e-143 514.2 457 64.8
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 7.6e-143 511.5 357 72.5
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.8e-142 509.2 499 58.9
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.8e-142 509.2 401 66.6
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 7.9e-140 501.5 521 55.3
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.6e-137 493.8 259 98.1
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.4e-136 490.0 509 56.4
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 6.9e-136 488.4 430 59.3
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.0e-135 486.9 510 56.1
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 2.6e-135 486.5 523 53.9
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 5.0e-134 482.3 413 63.0
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 8.4e-134 481.5 429 59.2
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.1e-132 476.9 478 55.0
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.3e-131 474.2 543 54.9
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 5.1e-131 472.2 421 63.2
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 5.7e-122 442.2 489 54.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.8e-121 439.9 489 54.2
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 4.8e-121 439.1 496 52.2
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.2e-119 434.5 416 59.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.2e-119 434.5 309 68.3
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 2.6e-119 433.3 354 63.0
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-118 430.6 488 51.4
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.1e-116 423.7 432 52.3
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.6e-116 422.9 305 68.2
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-113 413.3 362 59.7
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.0e-110 404.8 494 50.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.2e-110 403.7 440 49.8
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 9.4e-109 398.3 496 50.0
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.8e-107 394.0 504 49.0
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.3e-102 377.9 358 54.7
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.5e-101 373.6 475 49.5
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 7.2e-101 372.1 440 50.7
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 5.2e-99 365.9 422 47.6
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 4.8e-97 359.4 450 46.7
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 5.0e-94 349.4 286 63.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.7e-92 343.6 334 57.2
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 5.2e-91 339.3 703 36.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 8.8e-91 338.6 347 52.7
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 7.2e-85 318.9 413 46.7
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 9.8e-82 308.5 492 41.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.3e-73 281.6 330 44.8
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.9e-73 280.4 277 53.4
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 8.3e-73 278.9 414 41.8
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 2.0e-71 274.2 307 49.5
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.7e-71 273.9 151 92.7
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.3e-70 271.6 464 39.4
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 5.4e-64 249.6 360 43.1
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.0e-62 245.4 134 97.8
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.5e-61 241.5 285 51.6
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 8.1e-44 182.6 274 47.1
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 9.0e-43 179.1 177 57.1
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 4.0e-35 153.7 307 39.4
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.2e-33 147.9 94 70.2
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 5.3e-27 126.7 99 61.6
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.9e-24 118.2 106 58.5
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 3.2e-24 117.5 93 68.8
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 4.8e-20 103.6 120 50.0
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 8.2e-20 102.8 154 44.8
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 2.2e-17 94.7 120 47.5
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 2.5e-16 91.3 211 37.0
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 5.5e-16 90.1 45 88.9
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.7e-15 87.8 122 43.4
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 2.3e-14 84.7 76 55.3
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.9e-13 81.6 127 40.9
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.5e-13 81.3 70 57.1
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 3.3e-13 80.9 46 82.6
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 4.5e-10 70.5 54 59.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.8e-09 67.4 200 25.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.5e-09 66.2 234 24.8
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.1e-08 65.9 51 60.8
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 1.9e-08 65.1 66 43.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 4.6e-07 60.5 118 36.4
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 7.9e-07 59.7 31 87.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 7.9e-07 59.7 325 23.1
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.8e-06 56.2 234 24.4


User provided reference genes

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