Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 1.9e-107 392.5 192 100.0
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 4.3e-72 275.0 151 92.7
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 5.6e-72 274.6 151 92.7
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.8e-47 191.8 153 68.0
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 4.1e-30 135.6 159 47.2
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.7e-15 87.0 151 36.4
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 2.8e-15 86.3 151 41.1
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.1e-14 84.3 130 42.3
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.4e-14 84.0 149 38.3
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 2.4e-14 83.2 176 38.1
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.4e-14 83.2 153 36.6
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 3.1e-14 82.8 170 36.5
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 4.1e-14 82.4 145 41.4
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 4.1e-14 82.4 149 38.9
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 5.4e-14 82.0 102 45.1
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 5.4e-14 82.0 151 36.4
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 7.0e-14 81.6 145 39.3
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 7.0e-14 81.6 152 38.2
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 7.0e-14 81.6 120 38.3
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 9.2e-14 81.3 158 35.4
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 9.2e-14 81.3 134 38.8
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.2e-13 80.9 96 44.8
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.2e-13 80.9 157 36.9
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.6e-13 80.5 146 34.9
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 1.6e-13 80.5 124 39.5
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-13 80.5 124 39.5
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-13 80.5 124 39.5
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.0e-13 80.1 158 36.1
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 2.0e-13 80.1 151 37.1
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.0e-13 80.1 140 39.3
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 3.5e-13 79.3 96 42.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 3.5e-13 79.3 124 43.5
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.5e-13 79.3 122 37.7
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 4.5e-13 79.0 152 36.8
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.5e-13 79.0 160 36.9
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 4.5e-13 79.0 121 39.7
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-13 79.0 122 41.0
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 4.5e-13 79.0 143 37.1
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 5.9e-13 78.6 96 40.6
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 7.8e-13 78.2 165 33.3
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.0e-12 77.8 145 35.9
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.0e-12 77.8 101 45.5
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 1.0e-12 77.8 143 37.1
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.0e-12 77.8 164 37.8
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.3e-12 77.4 144 40.3
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.3e-12 77.4 163 36.2
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.7e-12 77.0 134 38.1
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.3e-12 76.6 126 39.7
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.3e-12 76.6 156 39.1
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.3e-12 76.6 161 39.1
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.3e-12 76.6 144 37.5
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.3e-12 76.6 101 44.6
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 2.3e-12 76.6 101 44.6
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.9e-12 76.3 135 38.5
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.9e-12 76.3 122 41.0
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 2.9e-12 76.3 148 38.5
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 2.9e-12 76.3 101 44.6
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 3.8e-12 75.9 122 40.2
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 3.8e-12 75.9 116 41.4
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 3.8e-12 75.9 122 39.3
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 5.0e-12 75.5 133 39.8
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.0e-12 75.5 143 37.1
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 5.0e-12 75.5 120 40.0
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 6.6e-12 75.1 147 35.4
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 6.6e-12 75.1 128 43.0
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 6.6e-12 75.1 93 44.1
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 8.6e-12 74.7 120 40.0
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 8.6e-12 74.7 120 40.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 8.6e-12 74.7 96 46.9
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 8.6e-12 74.7 171 36.8
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.1e-11 74.3 84 44.0
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.1e-11 74.3 96 41.7
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.1e-11 74.3 151 35.1
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.5e-11 73.9 136 36.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.5e-11 73.9 153 34.6
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.5e-11 73.9 139 37.4
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.9e-11 73.6 135 37.8
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.9e-11 73.6 137 38.0
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.9e-11 73.6 137 38.0
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.9e-11 73.6 101 44.6
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 2.5e-11 73.2 151 38.4
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.5e-11 73.2 138 37.0
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 2.5e-11 73.2 147 37.4
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.3e-11 72.8 135 37.0
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 3.3e-11 72.8 132 38.6
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.3e-11 72.4 135 37.8
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 4.3e-11 72.4 152 37.5
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 4.3e-11 72.4 84 46.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.3e-11 72.4 148 36.5
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.6e-11 72.0 79 46.8
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 7.3e-11 71.6 101 44.6
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 7.3e-11 71.6 134 36.6
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 7.3e-11 71.6 149 35.6
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 9.5e-11 71.2 144 36.1
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 9.5e-11 71.2 154 34.4
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 9.5e-11 71.2 160 38.1
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.2e-10 70.9 170 35.3
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.6e-10 70.5 135 37.0
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.6e-10 70.5 158 36.7
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 2.1e-10 70.1 150 35.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.1e-10 70.1 152 37.5
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 2.1e-10 70.1 147 38.1
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 2.1e-10 70.1 122 38.5
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 2.1e-10 70.1 96 40.6
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 2.8e-10 69.7 142 34.5
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.8e-10 69.7 147 36.7
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 3.6e-10 69.3 147 36.1
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.6e-10 69.3 152 37.5
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.7e-10 68.9 84 42.9
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 6.1e-10 68.6 147 33.3
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.1e-10 68.6 148 37.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 6.1e-10 68.6 147 32.7
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 8.0e-10 68.2 143 37.8
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 8.0e-10 68.2 152 35.5
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 8.0e-10 68.2 159 35.8
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 8.0e-10 68.2 155 32.3
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.0e-09 67.8 148 37.8
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.0e-09 67.8 148 37.8
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.0e-09 67.8 144 34.7
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.4e-09 67.4 147 32.7
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.8e-09 67.0 152 36.8
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 1.8e-09 67.0 144 34.0
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 6.8e-09 65.1 83 42.2
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.2e-08 64.3 122 32.0
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.6e-08 63.2 62 45.2
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 2.6e-08 63.2 84 40.5
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.5e-08 61.6 60 53.3
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 9.8e-08 61.2 170 33.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.7e-07 59.3 90 33.3
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 8.3e-07 58.2 149 32.2
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-06 57.0 54 50.0
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 4.1e-06 55.8 54 48.1
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 7.0e-06 55.1 75 44.0
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 9.2e-06 54.7 143 32.9


User provided reference genes

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