Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 0.0e+00 2209.5 1153 100.0
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 0.0e+00 1552.7 1136 72.4
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1121.7 1033 56.5
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1084.7 1031 55.4
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1075.1 1030 55.4
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 7.9e-312 1073.9 1041 54.3
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 1.6e-311 1072.8 1186 50.3
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 1.6e-307 1059.7 1032 54.5
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 1.8e-306 1056.2 1033 54.0
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 4.0e-306 1055.0 1164 50.5
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 7.5e-305 1050.8 1045 53.5
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 5.4e-303 1044.6 1038 53.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 1.2e-302 1043.5 1170 49.3
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.6e-301 1037.7 1175 48.0
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 8.6e-301 1037.3 1169 50.2
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 9.5e-300 1033.9 1147 49.3
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 4.7e-299 1031.6 1028 51.5
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 1.4e-298 1030.0 1187 48.4
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 2.4e-298 1029.2 1044 51.6
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 2.6e-297 1025.8 1052 52.6
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 2.6e-297 1025.8 1181 49.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 2.2e-296 1022.7 1040 52.1
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 3.8e-296 1021.9 1022 53.3
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 6.4e-296 1021.1 1186 48.8
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.9e-295 1019.6 1034 52.1
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 4.2e-295 1018.5 1035 50.8
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 2.1e-294 1016.1 1045 51.8
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.7e-293 1013.1 1050 51.4
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 2.3e-293 1012.7 1185 47.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 3.0e-293 1012.3 1077 51.6
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 4.3e-292 1008.4 1183 47.3
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 5.6e-292 1008.1 1149 49.1
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 5.6e-292 1008.1 1175 48.4
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 7.3e-292 1007.7 1039 51.9
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 7.3e-292 1007.7 1035 52.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 2.8e-291 1005.7 1151 49.0
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 2.8e-291 1005.7 1148 48.7
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 4.7e-291 1005.0 1054 51.7
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 8.1e-291 1004.2 1162 48.5
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 1.4e-290 1003.4 1137 48.6
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 4.0e-290 1001.9 1174 47.4
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 2.0e-289 999.6 984 53.9
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 2.0e-289 999.6 1051 50.8
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 4.4e-289 998.4 1184 47.4
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.8e-289 998.0 1051 50.9
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 2.2e-288 996.1 1170 48.2
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 3.8e-288 995.3 1031 51.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 3.8e-288 995.3 1239 47.5
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 4.9e-288 995.0 1210 47.2
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 9.3e-287 990.7 1181 47.8
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 6.6e-285 984.6 1171 48.2
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 8.7e-285 984.2 1038 49.5
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 1.1e-284 983.8 1061 49.5
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 2.5e-284 982.6 1138 48.2
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 1.8e-282 976.5 1150 47.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 4.0e-282 975.3 1103 47.1
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 5.8e-281 971.5 1151 46.5
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 1.7e-280 969.9 1182 47.0
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 1.1e-279 967.2 1148 46.6
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 1.2e-278 963.8 1190 47.0
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 7.9e-278 961.1 1032 49.1
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 1.1e-276 957.2 1037 48.9
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 6.2e-275 951.4 1030 48.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 2.4e-274 949.5 1152 46.0
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 9.0e-274 947.6 1152 46.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 9.9e-273 944.1 1184 44.6
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 9.9e-273 944.1 1150 45.8
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 3.8e-272 942.2 993 49.4
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 4.9e-272 941.8 1143 46.5
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 4.9e-272 941.8 1143 46.5
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 3.2e-271 939.1 1142 46.3
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 2.7e-270 936.0 1036 48.2
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 3.3e-268 929.1 1042 48.3
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 6.9e-266 921.4 1049 48.5
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 5.8e-265 918.3 1159 46.0
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 2.9e-264 916.0 998 48.6
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 7.1e-263 911.4 1343 42.1
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 3.7e-259 899.0 1141 44.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 2.3e-253 879.8 1130 43.8
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 2.5e-252 876.3 956 49.6
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 4.3e-252 875.5 1519 36.9
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 8.2e-251 871.3 1143 44.1
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 1.3e-248 864.0 1021 47.8
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.7e-243 847.0 1055 45.7
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 1.5e-241 840.5 1055 45.8
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 5.5e-239 832.0 1056 47.0
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.6e-228 796.6 1151 41.1
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.8e-227 793.1 1156 41.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 7.0e-210 735.3 951 45.4
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 3.6e-198 696.4 722 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.6e-196 690.3 1062 40.2
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.6e-196 690.3 729 49.2
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.4e-189 667.9 970 39.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.2e-182 642.5 837 44.7
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.7e-179 634.4 1032 37.0
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 8.7e-168 595.5 634 51.1
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.5e-167 594.0 1064 36.8
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 6.2e-166 589.3 775 44.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.1e-165 587.0 657 48.1
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.1e-165 587.0 657 48.1
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 4.6e-161 573.2 1050 36.3
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 4.3e-143 513.5 663 45.1
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 9.4e-130 469.2 484 50.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 9.7e-127 459.1 1226 30.3
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 5.2e-96 357.1 428 46.7
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 9.5e-74 283.1 400 44.8
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 7.9e-52 210.3 179 57.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.4e-37 162.9 270 35.9
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.1e-24 120.2 272 29.4
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 4.5e-23 114.8 106 53.8
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.2e-11 74.7 70 50.0
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 6.7e-11 74.3 87 43.7
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 2.8e-09 68.9 73 49.3
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 4.8e-09 68.2 59 62.7
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 3.1e-08 65.5 153 30.1


User provided reference genes

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