Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256410 Zea mays HOM05D002551 ORTHO05D002832 7.2e-106 387.5 232 100.0
Zm00001eb052450 Zea mays HOM05D002551 ORTHO05D002832 6.7e-35 151.8 152 80.9
Zm00001eb279080 Zea mays HOM05D007724 ORTHO05D009363 1.5e-31 140.6 81 84.0
Os03g0663800 Oryza sativa ssp. japonica HOM05D002551 ORTHO05D002832 5.9e-23 112.1 92 60.9
Zm00001eb189040 Zea mays HOM05D002551 ORTHO05D446659 1.9e-21 107.1 103 60.2
Zm00001eb183240 Zea mays HOM05D002551 ORTHO05D443072 1.9e-18 97.1 48 91.7
MBI01_g44541_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 2.7e-12 76.6 67 49.3
Actinidia21130 Actinidia chinensis HOM05D002551 ORTHO05D002832 3.6e-12 76.3 67 50.7
Ah.02g111200 Amaranthus hybridus HOM05D002551 ORTHO05D002832 3.6e-12 76.3 67 49.3
MBI01_g44542_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 3.6e-12 76.3 67 49.3
CDE07G1821 Ceratophyllum demersum HOM05D003259 ORTHO05D002832 4.7e-12 75.9 67 49.3
Actinidia24912 Actinidia chinensis HOM05D002551 ORTHO05D002832 7.9e-12 75.1 69 49.3
Peaxi162Scf00230g00126 Petunia axillaris HOM05D002551 ORTHO05D002832 7.9e-12 75.1 67 49.3
PGSC0003DMG400019354 Solanum tuberosum HOM05D002551 ORTHO05D002832 1.8e-11 73.9 67 47.8
EL10Ac5g10531 Beta vulgaris HOM05D002551 ORTHO05D002832 2.3e-11 73.6 67 46.3
Dinv34780 Davidia involucrata HOM05D002551 ORTHO05D002832 2.3e-11 73.6 67 49.3
MBI01_g42408_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 2.3e-11 73.6 67 46.3
Nitab4.5_0000252g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.3e-11 73.6 67 46.3
Nitab4.5_0001729g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.3e-11 73.6 67 46.3
TWI75G1269 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 2.3e-11 73.6 70 47.1
Rhsim01G0273000 Rhododendron simsii HOM05D002551 ORTHO05D002832 3.0e-11 73.2 70 44.3
vmacro14908 Vaccinium macrocarpon HOM05D002551 ORTHO05D002832 3.0e-11 73.2 67 46.3
Manes.05G079100 Manihot esculenta HOM05D002551 ORTHO05D002832 3.9e-11 72.8 67 50.7
SGA_v2.0_scaffold81G26035 Striga asiatica HOM05D002551 ORTHO05D002832 5.1e-11 72.4 67 47.8
TAR633G2055 Trochodendron aralioides HOM05D002551 ORTHO05D002832 6.7e-11 72.0 67 44.8
MELO3C015789.2 Cucumis melo HOM05D002551 ORTHO05D002832 1.1e-10 71.2 67 49.3
Lsat_1_v5_gn_9_6181 Lactuca sativa HOM05D002551 ORTHO05D002832 1.1e-10 71.2 67 47.8
Lj9C529T11 Lonicera japonica HOM05D002551 ORTHO05D002832 1.1e-10 71.2 67 43.3
GSVIVG01001185001 Vitis vinifera HOM05D002551 ORTHO05D002832 1.1e-10 71.2 89 39.3
CDE04G2296 Ceratophyllum demersum HOM05D002551 ORTHO05D002832 1.5e-10 70.9 67 46.3
ClCG09G007260 Citrullus lanatus HOM05D002551 ORTHO05D002832 1.5e-10 70.9 67 47.8
Ciclev10006494m.g Citrus clementina HOM05D002551 ORTHO05D002832 1.5e-10 70.9 67 50.7
ECA247G2018 Erigeron canadensis HOM05D002551 ORTHO05D002832 1.5e-10 70.9 67 46.3
CANSAT25G1299 Cannabis sativa HOM05D002551 ORTHO05D002832 2.0e-10 70.5 67 43.3
CsaV3_7G027740 Cucumis sativus L. HOM05D002551 ORTHO05D002832 2.0e-10 70.5 67 47.8
Eucgr.D01140 Eucalyptus grandis HOM05D002551 ORTHO05D002832 2.0e-10 70.5 67 46.3
TAR362G0951 Trochodendron aralioides HOM05D002551 ORTHO05D002832 2.6e-10 70.1 67 46.3
Manes.05G078900 Manihot esculenta HOM05D002551 ORTHO05D002832 4.4e-10 69.3 67 49.3
PSO832G4341 Papaver somniferum HOM05D002551 ORTHO05D002832 4.4e-10 69.3 67 46.3
Dinv32904 Davidia involucrata HOM05D002551 ORTHO05D002832 5.7e-10 68.9 130 44.6
Potri.005G212266 Populus trichocarpa HOM05D002551 ORTHO05D002832 5.7e-10 68.9 67 43.3
Solyc09g065470.3 Solanum lycopersicum HOM05D002551 ORTHO05D002832 5.7e-10 68.9 56 50.0
Cpa.g.sc52.61 Carica papaya HOM05D002551 ORTHO05D002832 7.4e-10 68.6 67 49.3
Sopen09g027240 Solanum pennellii HOM05D002551 ORTHO05D002832 7.4e-10 68.6 56 50.0
ATR0665G664 Amborella trichopoda HOM05D002551 ORTHO05D002832 9.7e-10 68.2 67 46.3
Migut.N02035 Erythranthe guttata HOM05D002551 ORTHO05D002832 9.7e-10 68.2 67 43.3
Migut.O00476 Erythranthe guttata HOM05D002551 ORTHO05D002832 9.7e-10 68.2 67 43.3
Haze_04679 Corylus avellana HOM05D002551 ORTHO05D002832 1.3e-09 67.8 67 43.3
PSO210G2787 Papaver somniferum HOM05D002551 ORTHO05D002832 1.3e-09 67.8 67 43.3
Aqoxy2G03428 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 1.7e-09 67.4 67 44.8
PGR004G1796 Punica granatum HOM05D002551 ORTHO05D002832 1.7e-09 67.4 67 47.8
Gohir.A09G217600 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.2e-09 67.0 67 47.8
Cfa006172 Carpinus fangiana HOM05D002551 ORTHO05D002832 2.8e-09 66.6 67 41.8
HanXRQChr05g0154401 Helianthus annuus HOM05D002551 ORTHO05D002832 2.8e-09 66.6 67 46.3
GSVIVG01001186001 Vitis vinifera HOM05D003028 ORTHO05D003465 2.8e-09 66.6 67 46.3
CAN.G1699.1 Capsicum annuum HOM05D002551 ORTHO05D002832 3.7e-09 66.2 67 46.3
MELO3C006516.2 Cucumis melo HOM05D002551 ORTHO05D002832 3.7e-09 66.2 67 41.8
CiPaw.08G107900 Carya illinoinensis HOM05D002551 ORTHO05D002832 4.8e-09 65.9 67 41.8
Nitab4.5_0004062g0010 Nicotiana tabacum HOM05D002551 ORTHO05D002832 4.8e-09 65.9 67 47.8
Sc24g0003280 Simmondsia chinensis HOM05D002551 ORTHO05D002832 4.8e-09 65.9 70 42.9
Migut.G00363 Erythranthe guttata HOM05D002551 ORTHO05D002832 6.3e-09 65.5 67 43.3
Gorai.006G241000 Gossypium raimondii HOM05D002551 ORTHO05D002832 6.3e-09 65.5 65 47.7
Sopen09g031220 Solanum pennellii HOM05D002551 ORTHO05D002832 6.3e-09 65.5 67 43.3
Aqoxy5G03465 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 8.2e-09 65.1 67 41.8
Peaxi162Scf00230g00127 Petunia axillaris HOM05D002551 ORTHO05D002832 8.2e-09 65.1 67 40.3
FAN15G1237 Fragaria x ananassa HOM05D002551 ORTHO05D002832 1.1e-08 64.7 67 43.3
PSO832G2004 Papaver somniferum HOM05D002551 ORTHO05D002832 1.1e-08 64.7 67 40.3
TWI73G1150 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 1.1e-08 64.7 67 43.3
Aqoxy2G03431 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 40.3
Aqoxy5G03501 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 41.8
CSS0025481 Camellia sinensis var. sinensis HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 43.3
Nitab4.5_0002307g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 46.3
Solyc09g082340.2 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 41.8
PGSC0003DMG400032247 Solanum tuberosum HOM05D002551 ORTHO05D002832 1.4e-08 64.3 67 43.3
Nn1g02381 Nelumbo nucifera HOM05D002551 ORTHO05D002832 1.8e-08 63.9 67 38.8
Sed0010447 Sechium edule HOM05D002551 ORTHO05D002832 1.8e-08 63.9 67 41.8
CsaV3_3G013090 Cucumis sativus L. HOM05D002551 ORTHO05D002832 2.4e-08 63.5 67 40.3
FvH4_2g23190 Fragaria vesca HOM05D002551 ORTHO05D002832 2.4e-08 63.5 67 41.8
Gohir.D09G220000 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.4e-08 63.5 63 47.6
Thecc.04G235500 Theobroma cacao HOM05D002551 ORTHO05D002832 2.4e-08 63.5 67 43.3
Cfa008469 Carpinus fangiana HOM05D002551 ORTHO05D002832 3.1e-08 63.2 55 54.5
ClCG05G005030 Citrullus lanatus HOM05D002551 ORTHO05D002832 3.1e-08 63.2 67 40.3
FAN20G1127 Fragaria x ananassa HOM05D002551 ORTHO05D002832 3.1e-08 63.2 67 41.8
RcHm_v2.0_Chr6g0290441 Rosa chinensis HOM05D002551 ORTHO05D002832 4.1e-08 62.8 67 38.8
EL10Ac3g06479 Beta vulgaris HOM05D002551 ORTHO05D002832 5.3e-08 62.4 67 41.8
Peaxi162Scf00092g00216 Petunia axillaris HOM05D002551 ORTHO05D002832 5.3e-08 62.4 67 46.3
CiPaw.01G198100 Carya illinoinensis HOM05D002551 ORTHO05D002832 7.0e-08 62.0 67 43.3
PSO210G4289 Papaver somniferum HOM05D002551 ORTHO05D002832 7.0e-08 62.0 64 45.3
Aqoxy5G00432 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 9.1e-08 61.6 70 41.4
CAN.G1476.2 Capsicum annuum HOM05D002551 ORTHO05D002832 9.1e-08 61.6 70 40.0
Gohir.A09G217700 Gossypium hirsutum HOM05D002551 ORTHO05D002832 1.5e-07 60.8 65 46.2
Gohir.D09G220100 Gossypium hirsutum HOM05D002551 ORTHO05D002832 1.5e-07 60.8 65 46.2
Gorai.006G241100 Gossypium raimondii HOM05D002551 ORTHO05D002832 1.5e-07 60.8 65 46.2
MD03G1261200 Malus domestica HOM05D002551 ORTHO05D002832 1.5e-07 60.8 67 41.8
DCAR_005862 Daucus carota HOM05D002551 ORTHO05D002832 2.0e-07 60.5 67 40.3
PSO210G1147 Papaver somniferum HOM05D002551 ORTHO05D002832 2.0e-07 60.5 64 45.3
PSO761G0632 Papaver somniferum HOM05D002551 ORTHO05D002832 2.0e-07 60.5 61 45.9
HPP92_015622 Vanilla planifolia HOM05D002551 ORTHO05D002832 2.0e-07 60.5 88 38.6
Gohir.A12G003800 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.6e-07 60.1 67 40.3
Gohir.D12G003500 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.6e-07 60.1 67 40.3
Gorai.008G003300 Gossypium raimondii HOM05D002551 ORTHO05D002832 2.6e-07 60.1 67 40.3
Nitab4.5_0002307g0040 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.6e-07 60.1 67 43.3
QL06p001653 Quercus lobata HOM05D002551 ORTHO05D002832 2.6e-07 60.1 67 43.3
CANSAT78G1619 Cannabis sativa HOM05D002551 ORTHO05D002832 3.4e-07 59.7 67 38.8
CANSAT78G2456 Cannabis sativa HOM05D002551 ORTHO05D002832 3.4e-07 59.7 67 38.8
COL.COLO4_09061 Corchorus olitorius HOM05D002551 ORTHO05D002832 3.4e-07 59.7 67 43.3
MD11G1281600 Malus domestica HOM05D002551 ORTHO05D002832 3.4e-07 59.7 60 46.7
Atru.chr5.1483 Acer truncatum HOM05D002551 ORTHO05D002832 4.5e-07 59.3 67 38.8
CAN.G1699.2 Capsicum annuum HOM05D002551 ORTHO05D002832 5.9e-07 58.9 67 41.8
AUR62033661 Chenopodium quinoa HOM05D002551 ORTHO05D002832 5.9e-07 58.9 67 41.8
FAN17G0400 Fragaria x ananassa HOM05D002551 ORTHO05D002832 5.9e-07 58.9 72 43.1
FAN22G0282 Fragaria x ananassa HOM05D002551 ORTHO05D002832 5.9e-07 58.9 72 43.1
Manes.05G079000 Manihot esculenta HOM05D002551 ORTHO05D002832 5.9e-07 58.9 89 36.0
SHI00485 Sapria himalayana HOM05D002551 ORTHO05D002832 5.9e-07 58.9 67 37.3
HPP92_018618 Vanilla planifolia HOM05D002551 ORTHO05D002832 7.7e-07 58.5 67 41.8
AUR62034727 Chenopodium quinoa HOM05D002551 ORTHO05D002832 1.0e-06 58.2 67 41.8
Nitab4.5_0004062g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 1.0e-06 58.2 64 45.3
Glyma.02G145700 Glycine max HOM05D002551 ORTHO05D002832 1.3e-06 57.8 68 41.2
Solyc09g082360.4 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.3e-06 57.8 67 37.3
Nn1g02380 Nelumbo nucifera HOM05D002551 ORTHO05D002832 1.7e-06 57.4 67 35.8
TPR.G27145 Trifolium pratense HOM05D002551 ORTHO05D002832 1.7e-06 57.4 67 40.3
FvH4_4g15931 Fragaria vesca HOM05D002551 ORTHO05D002832 2.2e-06 57.0 72 41.7
Lalb_Chr22g0356821 Lupinus albus HOM05D002551 ORTHO05D002832 2.2e-06 57.0 70 34.3
Potri.006G002500 Populus trichocarpa HOM05D002551 ORTHO05D002832 2.2e-06 57.0 67 40.3
Lj5g0023538 Lotus japonicus HOM05D002551 ORTHO05D002832 3.8e-06 56.2 70 37.1
COL.COLO4_21520 Corchorus olitorius HOM05D002551 ORTHO05D002832 5.0e-06 55.8 63 39.7
Prupe.8G237500 Prunus persica HOM05D002551 ORTHO05D002832 5.0e-06 55.8 67 38.8
Ca_10865_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 6.5e-06 55.5 70 34.3
Glyma.10G028300 Glycine max HOM05D002551 ORTHO05D002832 6.5e-06 55.5 68 38.2
MD13G1196800 Malus domestica HOM05D002551 ORTHO05D002832 8.5e-06 55.1 67 41.8
MD16G1197200 Malus domestica HOM05D002551 ORTHO05D002832 8.5e-06 55.1 67 41.8
RcHm_v2.0_Chr4g0415511 Rosa chinensis HOM05D002551 ORTHO05D002832 8.5e-06 55.1 72 38.9
THA.LOC104822265 Tarenaya hassleriana HOM05D002551 ORTHO05D002832 8.5e-06 55.1 67 37.3


User provided reference genes

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