Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 0.0e+00 1348.6 678 100.0
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.5e-273 946.0 678 71.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.0e-196 689.9 684 53.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.0e-185 651.7 677 52.6
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.8e-181 640.2 665 53.2
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 3.1e-181 639.4 664 52.1
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 3.1e-181 639.4 654 52.0
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.5e-180 637.1 695 49.9
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.6e-180 636.3 687 51.8
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 7.6e-180 634.8 653 52.4
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 7.6e-180 634.8 660 51.8
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.9e-179 632.9 648 53.2
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.8e-179 632.5 673 50.4
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 4.2e-178 629.0 662 50.8
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-177 627.5 663 49.9
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.6e-177 627.1 659 52.7
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.0e-176 622.9 698 51.0
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.9e-176 622.5 688 48.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 5.1e-176 622.1 663 49.5
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.9e-175 620.2 662 51.7
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.5e-175 619.8 657 50.8
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.3e-175 619.4 699 48.5
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 5.6e-175 618.6 671 49.9
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 5.6e-175 618.6 687 50.1
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 2.1e-174 616.7 691 50.2
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.8e-174 616.3 685 50.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.1e-173 614.4 674 49.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.8e-173 613.6 665 51.7
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.4e-173 613.2 699 48.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 9.0e-173 611.3 654 52.1
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.5e-172 610.5 686 50.1
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.4e-172 609.4 665 49.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.4e-172 609.4 657 50.4
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.5e-172 609.0 665 51.6
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 5.8e-172 608.6 656 51.8
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 7.6e-172 608.2 657 50.1
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 9.9e-172 607.8 650 51.5
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.9e-171 606.3 665 49.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 4.9e-171 605.5 688 49.1
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 4.9e-171 605.5 689 48.8
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 6.4e-171 605.1 691 48.6
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.2e-170 602.4 687 48.0
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.7e-169 599.7 697 49.5
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.7e-169 599.7 665 49.5
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.6e-169 599.0 670 49.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 6.7e-168 595.1 655 49.8
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 2.5e-167 593.2 656 50.0
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.5e-167 593.2 688 48.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 3.3e-167 592.8 689 47.6
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 4.3e-167 592.4 625 52.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 7.4e-167 591.7 701 46.9
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 7.4e-167 591.7 689 48.3
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.3e-166 590.9 701 46.8
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.1e-166 590.1 696 47.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.7e-166 589.3 656 49.7
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 6.2e-166 588.6 668 48.5
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.1e-165 587.8 687 46.4
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.4e-165 587.4 698 46.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.4e-165 587.4 666 49.2
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.8e-165 587.0 670 49.9
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 6.9e-165 585.1 695 46.6
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.5e-164 583.9 692 47.7
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.0e-164 583.6 642 50.3
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.6e-164 583.2 668 48.8
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 2.6e-164 583.2 663 49.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.3e-163 580.9 754 45.2
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.7e-163 580.5 663 48.0
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.2e-163 580.1 685 46.9
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.2e-163 580.1 666 48.9
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 3.8e-163 579.3 685 46.6
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.4e-162 577.4 663 46.9
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 5.5e-162 575.5 654 49.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 7.1e-162 575.1 725 45.9
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 9.3e-162 574.7 680 47.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 7.9e-161 571.6 653 49.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.3e-160 570.9 696 47.0
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.8e-160 570.5 642 49.5
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 3.0e-160 569.7 642 48.9
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 6.7e-160 568.5 646 49.4
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.3e-159 566.2 703 46.7
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.7e-159 565.5 656 49.2
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.6e-159 564.7 696 46.3
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-158 564.3 694 46.1
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.6e-158 563.9 632 50.5
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.6e-158 563.9 636 49.4
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.6e-158 563.9 664 47.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.3e-158 562.0 656 47.6
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.1e-157 561.2 697 46.2
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.4e-157 560.8 713 45.6
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.8e-157 560.5 678 47.8
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.1e-157 559.3 711 46.1
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.5e-156 557.4 642 48.1
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.6e-156 556.6 680 47.2
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.4e-156 556.2 651 46.2
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.0e-155 554.7 643 48.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-155 554.3 693 46.5
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.7e-155 553.9 679 47.0
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 2.9e-155 553.1 607 48.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 5.0e-155 552.4 667 46.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 6.5e-155 552.0 658 46.2
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 9.3e-154 548.1 638 46.6
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.6e-153 547.4 685 47.7
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.9e-151 540.4 661 46.4
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 3.7e-150 536.2 624 48.2
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 4.8e-150 535.8 676 45.1
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 6.3e-150 535.4 610 49.5
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.4e-149 534.3 677 45.2
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 9.1e-149 531.6 678 44.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-148 531.2 678 44.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.7e-148 528.5 638 46.7
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.3e-147 527.7 718 43.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.2e-147 526.9 720 44.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.5e-146 523.5 588 49.8
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.5e-146 522.3 650 46.9
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 9.4e-146 521.5 710 43.9
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.4e-144 517.7 656 45.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.3e-144 516.9 649 45.0
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 8.8e-144 515.0 685 43.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.6e-143 513.5 613 48.1
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 5.7e-143 512.3 592 49.3
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.7e-143 511.5 654 45.1
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.7e-142 509.6 677 43.6
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 4.1e-141 506.1 639 46.5
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 7.7e-140 501.9 655 43.2
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.8e-139 499.6 670 41.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 6.5e-139 498.8 562 49.6
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.8e-136 490.7 659 46.3
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.1e-125 454.9 457 55.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.0e-124 450.7 510 47.5
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 4.7e-121 439.5 704 40.1
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.6e-119 433.7 728 37.9
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.3e-118 428.7 658 39.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.1e-117 426.8 678 39.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.7e-116 423.7 490 48.0
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 5.9e-116 422.5 516 47.1
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-113 414.8 675 39.3
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.7e-113 412.9 664 38.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.4e-112 411.4 646 39.2
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.0e-108 397.5 491 45.6
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 3.3e-106 390.2 640 37.5
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.2e-104 382.9 633 38.4
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 8.3e-102 375.6 673 35.8
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.1e-101 373.2 418 48.3
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 9.5e-98 362.1 648 38.1
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.8e-97 360.5 742 34.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.8e-97 360.5 686 36.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.4e-93 348.2 789 32.1
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 5.4e-93 346.3 813 32.7
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.3e-88 330.9 364 49.5
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 3.2e-85 320.5 593 35.1
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.2e-81 306.2 331 48.0
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 5.8e-79 299.7 493 37.3
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.2e-78 297.7 512 38.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 8.4e-78 295.8 569 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.9e-77 294.7 744 30.5
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.1e-72 277.3 492 34.8
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 7.1e-61 239.6 275 48.4
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.1e-58 232.3 213 56.8
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.1e-57 228.0 210 53.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 3.4e-55 220.7 341 37.5
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 5.7e-26 123.6 222 35.6
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.7e-26 122.9 101 63.4
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.8e-25 121.3 224 33.9
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.1e-18 99.4 115 47.0
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.2e-14 85.1 65 61.5
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.2e-14 85.1 109 49.5
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.5e-13 82.4 66 59.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.1e-12 78.6 132 38.6
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.3e-11 75.1 163 33.7
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 8.2e-09 66.6 57 52.6
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 7.0e-08 63.5 52 55.8
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.2e-07 62.8 53 47.2
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 7.7e-07 60.1 53 49.1


User provided reference genes

Program Settings