Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb255750 Zea mays HOM05D000988 ORTHO05D000724 1.2e-133 479.9 254 100.0
Os02g0762400 Oryza sativa ssp. japonica HOM05D000988 ORTHO05D000724 2.3e-52 209.9 263 56.3
Zm00001eb193730 Zea mays HOM05D000988 ORTHO05D000724 1.4e-46 190.7 270 57.0
Nn1g05833 Nelumbo nucifera HOM05D000988 ORTHO05D000724 1.1e-14 84.7 256 36.3
Zm00001eb373160 Zea mays HOM05D000988 ORTHO05D000724 1.4e-14 84.3 280 34.6
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 2.4e-14 83.6 252 33.3
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.2e-14 83.2 252 36.1
TAR628G0579 Trochodendron aralioides HOM05D000988 ORTHO05D000724 4.2e-14 82.8 252 35.7
Rhsim10G0118800 Rhododendron simsii HOM05D000988 ORTHO05D000724 2.1e-13 80.5 251 35.9
HPP92_004111 Vanilla planifolia HOM05D000988 ORTHO05D000724 5.1e-12 75.9 250 33.6
CARHR182920 Cardamine hirsuta HOM05D000988 ORTHO05D000724 6.7e-12 75.5 251 35.5
Cc01_g17050 Coffea canephora HOM05D000988 ORTHO05D000724 8.7e-12 75.1 265 32.1
MBI06_g24646_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 1.1e-11 74.7 247 34.4
Actinidia00450 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.5e-11 73.6 138 41.3
Actinidia12960 Actinidia chinensis HOM05D000988 ORTHO05D000724 3.3e-11 73.2 139 41.7
Rhsim08G0101500 Rhododendron simsii HOM05D000988 ORTHO05D000724 3.3e-11 73.2 251 33.1
HPP92_004079 Vanilla planifolia HOM05D000988 ORTHO05D000724 3.3e-11 73.2 251 35.1
Thhalv10004871m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 4.3e-11 72.8 256 30.9
Hma1.2p1_0370F.1_g137940 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 4.3e-11 72.8 93 47.3
Sp2g19210 Schrenkiella parvula HOM05D000988 ORTHO05D000724 4.3e-11 72.8 259 31.7
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 2.8e-10 70.1 258 33.3
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 4.8e-10 69.3 252 34.5
CSS0039823 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 6.2e-10 68.9 143 39.9
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 8.1e-10 68.6 86 48.8
DCAR_012640 Daucus carota HOM05D000988 ORTHO05D000724 1.1e-09 68.2 263 31.6
Nn5g30231 Nelumbo nucifera HOM05D000988 ORTHO05D000724 1.1e-09 68.2 234 36.3
Phvul.008G125600 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.8e-09 67.4 260 30.0
SGA_v2.0_scaffold204G41577 Striga asiatica HOM05D000988 ORTHO05D000724 3.1e-09 66.6 105 41.9
Solyc12g098310.2 Solanum lycopersicum HOM05D000988 ORTHO05D000724 4.0e-09 66.2 264 30.7
AL8G21990 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 6.9e-09 65.5 254 29.9
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 6.9e-09 65.5 284 29.2
CANSAT25G2421 Cannabis sativa HOM05D000988 ORTHO05D000724 9.0e-09 65.1 83 47.0
MBI02_g17335_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 9.0e-09 65.1 247 32.8
Sopen00g011190 Solanum pennellii HOM05D000988 ORTHO05D000724 9.0e-09 65.1 264 30.3
Sopen12g033090 Solanum pennellii HOM05D000988 ORTHO05D000724 9.0e-09 65.1 264 30.3
Manes.07G081800 Manihot esculenta HOM05D000988 ORTHO05D000724 1.2e-08 64.7 83 41.0
vmacro02192 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 1.5e-08 64.3 86 45.3
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 2.6e-08 63.5 135 39.3
Carub.0008s0855 Capsella rubella HOM05D000988 ORTHO05D000724 4.5e-08 62.8 258 29.8
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 4.5e-08 62.8 86 47.7
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 4.5e-08 62.8 236 31.4
ClCG02G005840 Citrullus lanatus HOM05D000988 ORTHO05D000724 5.8e-08 62.4 84 40.5
Eucgr.K02170 Eucalyptus grandis HOM05D000988 ORTHO05D000724 5.8e-08 62.4 274 32.1
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 7.6e-08 62.0 257 31.5
Lsat_1_v5_gn_5_179460 Lactuca sativa HOM05D000988 ORTHO05D000724 7.6e-08 62.0 258 30.2
Rhsim11G0166900 Rhododendron simsii HOM05D000988 ORTHO05D000724 7.6e-08 62.0 86 44.2
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 7.6e-08 62.0 253 32.4
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 9.9e-08 61.6 165 35.2
MELO3C018442.2 Cucumis melo HOM05D000988 ORTHO05D000724 9.9e-08 61.6 84 39.3
Hma1.2p1_0351F.1_g132960 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 9.9e-08 61.6 264 30.7
Lsat_1_v5_gn_8_90001 Lactuca sativa HOM05D000988 ORTHO05D000724 9.9e-08 61.6 255 29.0
VMungo1383G2984 Vigna mungo HOM05D000988 ORTHO05D000724 9.9e-08 61.6 260 30.4
Aa31LG5G17660 Aethionema arabicum HOM05D000988 ORTHO05D000724 1.3e-07 61.2 272 30.5
Hma1.2p1_1849F.1_g305250 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 1.3e-07 61.2 144 35.4
BcaC06g30755 Brassica carinata HOM05D000988 ORTHO05D000724 1.7e-07 60.8 254 32.7
C07p39440 Brassica napus HOM05D000988 ORTHO05D000724 1.7e-07 60.8 257 33.5
PGSC0003DMG400007708 Solanum tuberosum HOM05D000988 ORTHO05D000724 1.7e-07 60.8 263 29.3
A09p04640 Brassica napus HOM05D000988 ORTHO05D000724 2.2e-07 60.5 250 27.6
CDE09G0883 Ceratophyllum demersum HOM05D001625 ORTHO05D002663 2.2e-07 60.5 120 36.7
CsaV3_7G008680 Cucumis sativus L. HOM05D000988 ORTHO05D000724 2.2e-07 60.5 84 38.1
Os11g0614800 Oryza sativa ssp. japonica HOM05D000988 ORTHO05D000724 2.2e-07 60.5 153 35.9
PGR044G2689 Punica granatum HOM05D000988 ORTHO05D000724 2.2e-07 60.5 265 31.3
COL.COLO4_10276 Corchorus olitorius HOM05D000988 ORTHO05D000724 2.9e-07 60.1 289 31.8
Hund13559 Selenicereus undatus HOM05D000988 ORTHO05D000724 2.9e-07 60.1 60 46.7
CSS0020824 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.8e-07 59.7 256 28.1
Dinv23609 Davidia involucrata HOM05D000988 ORTHO05D000724 3.8e-07 59.7 83 41.0
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 3.8e-07 59.7 253 32.4
Thecc.01G226300 Theobroma cacao HOM05D000988 ORTHO05D000724 3.8e-07 59.7 260 30.8
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.8e-07 59.7 251 33.5
A06p38880 Brassica napus HOM05D000988 ORTHO05D000724 4.9e-07 59.3 254 31.5
GSVIVG01031765001 Vitis vinifera HOM05D000988 ORTHO05D000724 4.9e-07 59.3 253 31.2
Cpa.g.sc62.28 Carica papaya HOM05D000988 ORTHO05D000724 6.4e-07 58.9 93 38.7
Nitab4.5_0002428g0040 Nicotiana tabacum HOM05D000988 ORTHO05D000724 6.4e-07 58.9 250 30.0
Sabra04G0094000 Salix brachista HOM05D000988 ORTHO05D000724 6.4e-07 58.9 97 40.2
Sed0006444 Sechium edule HOM05D000988 ORTHO05D000724 6.4e-07 58.9 84 42.9
Thecc.02G098700 Theobroma cacao HOM05D000988 ORTHO05D000724 6.4e-07 58.9 175 31.4
Zm00001eb003110 Zea mays HOM05D000988 ORTHO05D000724 6.4e-07 58.9 259 33.2
Duzib212G0689 Durio zibethinus HOM05D000988 ORTHO05D000724 8.4e-07 58.5 284 30.3
AT5G48820 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 1.1e-06 58.2 259 30.1
Duzib248G0376 Durio zibethinus HOM05D000988 ORTHO05D000724 1.1e-06 58.2 181 33.1
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 1.4e-06 57.8 120 39.2
vmacro15522 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 1.4e-06 57.8 260 31.9
Zm00001eb221920 Zea mays HOM05D000988 ORTHO05D000724 1.4e-06 57.8 255 28.6
BcaC04g23761 Brassica carinata HOM05D000988 ORTHO05D000724 1.9e-06 57.4 250 28.0
C09p04950 Brassica napus HOM05D000988 ORTHO05D000724 1.9e-06 57.4 250 28.0
BolC9t53423H Brassica oleracea HOM05D000988 ORTHO05D000724 1.9e-06 57.4 250 28.0
CDE03G0420 Ceratophyllum demersum HOM05D000988 ORTHO05D000724 1.9e-06 57.4 131 35.1
Glyma.07G211300 Glycine max HOM05D000988 ORTHO05D000724 1.9e-06 57.4 57 54.4
Nitab4.5_0004214g0010 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.9e-06 57.4 250 30.8
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 1.9e-06 57.4 244 29.9
Zm00001eb100880 Zea mays HOM05D000988 ORTHO05D000724 1.9e-06 57.4 73 45.2
CDE06G0045 Ceratophyllum demersum HOM05D000988 ORTHO05D000724 2.4e-06 57.0 124 34.7
Haze_01841 Corylus avellana HOM05D000988 ORTHO05D000724 2.4e-06 57.0 56 53.6
Haze_01846 Corylus avellana HOM05D000988 ORTHO05D000724 2.4e-06 57.0 56 53.6
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 2.4e-06 57.0 146 35.6
EL10Ac6g15762 Beta vulgaris HOM05D000988 ORTHO05D000724 3.2e-06 56.6 71 43.7
COL.COLO4_32674 Corchorus olitorius HOM05D000988 ORTHO05D000724 3.2e-06 56.6 167 32.3
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 3.2e-06 56.6 188 30.3
RcHm_v2.0_Chr6g0258231 Rosa chinensis HOM05D000988 ORTHO05D000724 3.2e-06 56.6 84 45.2
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 3.2e-06 56.6 188 30.3
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 3.2e-06 56.6 188 30.3
TAR636G2975 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.2e-06 56.6 265 31.7
CiPaw.06G142900 Carya illinoinensis HOM05D000988 ORTHO05D000724 4.2e-06 56.2 170 34.7
FvH4_2g06360 Fragaria vesca HOM05D000988 ORTHO05D000724 4.2e-06 56.2 88 44.3
MD10G1092500 Malus domestica HOM05D000988 ORTHO05D000724 4.2e-06 56.2 88 37.5
Peaxi162Scf00016g01732 Petunia axillaris HOM05D000988 ORTHO05D000724 4.2e-06 56.2 99 36.4
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 4.2e-06 56.2 85 41.2
Potri.004G142100 Populus trichocarpa HOM05D000988 ORTHO05D000724 4.2e-06 56.2 99 38.4
FAN20G2007 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.5e-06 55.8 83 45.8
Lj1g0023642 Lotus japonicus HOM05D000988 ORTHO05D000724 5.5e-06 55.8 191 30.9
MD05G1077300 Malus domestica HOM05D000988 ORTHO05D000724 5.5e-06 55.8 98 40.8
Os09g0459900 Oryza sativa ssp. japonica HOM05D000988 ORTHO05D000724 5.5e-06 55.8 46 52.2
TAR365G0156 Trochodendron aralioides HOM05D000988 ORTHO05D000724 5.5e-06 55.8 269 29.4
arahy.Tifrunner.gnm1.ann1.VMPA50 Arachis hypogaea HOM05D000988 ORTHO05D000724 7.1e-06 55.5 261 28.0
Cc02_g18650 Coffea canephora HOM05D000988 ORTHO05D000724 7.1e-06 55.5 92 41.3
Oeu009754.3 Olea europaea HOM05D000988 ORTHO05D000724 7.1e-06 55.5 96 40.6
TWI53G0755 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 7.1e-06 55.5 268 29.5
BolC7t44463H Brassica oleracea HOM05D000988 ORTHO05D000724 9.3e-06 55.1 263 32.3
Ca_18673_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 9.3e-06 55.1 43 60.5
Glyma.02G133700 Glycine max HOM05D000988 ORTHO05D000724 9.3e-06 55.1 56 48.2
Glyma.18G170800 Glycine max HOM05D000988 ORTHO05D000724 9.3e-06 55.1 259 29.0
Oeu013698.1 Olea europaea HOM05D000988 ORTHO05D000724 9.3e-06 55.1 87 42.5
SGA_v2.0_scaffold90G27673 Striga asiatica HOM05D000988 ORTHO05D000724 9.3e-06 55.1 153 30.1


User provided reference genes

Program Settings