Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 2135.1 1085 100.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1090 76.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1644.8 1094 76.0
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1056 77.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1084 75.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1098 75.9
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1633.6 1093 75.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1074 76.6
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1003 80.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1630.9 1094 76.2
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1006 80.2
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1094 76.1
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1094 75.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1007 80.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1058 76.7
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1057 77.4
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1005 79.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1093 75.6
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1090 75.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1026 78.7
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1091 75.1
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1094 74.8
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1003 79.7
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1005 79.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1065 76.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1617.4 1112 74.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1614.4 1017 78.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1093 74.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1079 74.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1015 78.8
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1611.7 1092 75.3
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1609.3 1025 77.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1093 75.2
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1607.0 1028 76.9
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1031 77.0
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1017 78.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1086 74.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1018 78.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 986 79.1
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1004 76.9
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 1006 77.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1099 74.1
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1004 76.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1593.9 1006 77.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1593.9 1006 77.7
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1004 78.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1591.2 983 79.2
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1092 73.9
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1590.1 1098 73.7
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1085 74.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1588.9 1043 76.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1050 75.0
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1050 74.4
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 983 79.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1037 76.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1584.7 1004 78.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1004 76.3
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1083 73.7
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1004 76.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1093 72.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1582.4 984 78.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1581.6 1004 76.4
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1581.6 1064 74.9
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1016 77.6
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1004 76.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1076 72.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 1076 73.3
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1059 73.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1095 73.5
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1006 77.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1059 74.3
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1076 73.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 1136 71.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 1045 75.7
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 1050 74.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1059 74.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1126 71.8
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1076 72.9
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1073 72.5
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 1007 77.4
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 1102 72.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1567.4 1004 76.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1041 74.0
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1563.9 1058 73.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1561.6 1115 71.5
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1080 73.2
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1058 73.0
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1556.2 1056 72.6
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1555.0 1094 73.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1553.1 1061 72.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1551.6 1061 72.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1549.6 1062 72.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1548.1 1050 72.9
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1545.4 1019 73.9
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1545.0 1056 72.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1007 76.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1534.6 1010 74.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1533.9 1082 73.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1533.5 1029 74.7
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1533.1 1003 75.4
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1069 70.6
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1526.9 1034 74.3
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1507.7 1111 69.1
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1506.5 1070 70.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1500.3 1106 69.2
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1467.2 969 75.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1432.9 1019 68.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1428.7 914 77.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1420.2 869 80.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1418.3 1034 70.1
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1401.3 932 74.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1398.3 1068 65.2
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1391.7 1088 66.8
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1339.7 957 68.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1286.2 1116 62.9
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1284.2 1116 62.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1282.3 1052 62.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1260.0 801 77.9
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1187.2 849 71.7
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 1008 58.5
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1128.2 747 75.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1106.7 1090 53.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1103.2 1004 54.1
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1091.3 761 73.5
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1076.2 722 73.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.5e-311 1073.2 983 55.2
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.5e-294 1015.8 738 69.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-270 936.8 877 56.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.4e-265 917.5 777 58.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.6e-264 916.8 860 58.7
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 6.5e-250 868.2 587 71.6
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.8e-247 860.1 596 73.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.0e-242 842.0 976 45.3
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.8e-214 748.8 671 56.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.2e-204 716.5 642 58.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.7e-197 694.1 705 53.0
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.0e-191 671.8 388 83.2
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.3e-170 604.0 529 62.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.8e-168 597.0 412 72.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.7e-163 580.5 346 79.8
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.4e-158 563.5 507 61.9
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 5.3e-151 539.7 1047 35.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.6e-150 537.3 347 80.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.4e-148 531.6 393 64.9
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.4e-146 525.0 483 60.9
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.4e-130 471.9 309 74.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.5e-129 468.4 341 67.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-125 454.1 397 59.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 5.0e-117 426.8 332 66.3
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.0e-110 404.8 989 30.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.6e-105 387.9 966 28.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.1e-99 368.2 1002 27.6
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.5e-94 350.9 217 78.8
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.3e-92 344.4 226 74.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.4e-90 338.2 909 29.9
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-76 292.7 154 87.0
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 7.1e-55 220.3 124 90.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 7.9e-54 216.9 877 22.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-53 215.7 222 50.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.7e-51 208.0 332 35.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-46 193.0 310 41.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 6.9e-42 177.2 220 50.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.5e-41 174.5 154 58.4
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 3.2e-39 168.3 163 58.3
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.2e-39 167.2 152 55.3
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 4.4e-36 157.9 273 37.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.7e-35 154.8 134 59.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.6e-33 148.7 165 44.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.0e-32 146.7 148 52.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.4e-31 142.9 464 26.1
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 9.1e-26 123.6 426 25.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.5e-23 116.3 105 53.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.1e-22 112.5 296 25.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-18 99.8 83 61.4
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.4e-18 99.0 165 46.7
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.7e-14 84.7 83 57.8
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.3e-13 82.4 56 69.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 2.6e-12 79.0 45 82.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 6.3e-11 74.3 50 68.0
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-10 73.6 51 64.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 9.5e-07 60.5 36 72.2
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 9.5e-07 60.5 103 39.8
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-06 60.1 74 45.9


User provided reference genes

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