Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 2.4e-96 355.5 182 100.0
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 2.2e-65 252.7 188 76.6
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 2.8e-44 182.6 144 63.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 8.1e-44 181.0 144 61.8
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 1.4e-43 180.3 145 63.4
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 1.4e-43 180.3 179 53.6
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 8.9e-43 177.6 144 61.8
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 2.0e-42 176.4 182 52.7
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 9.8e-42 174.1 146 60.3
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 1.3e-41 173.7 184 53.3
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 3.7e-41 172.2 144 58.3
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 4.9e-41 171.8 182 52.7
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 4.9e-41 171.8 141 59.6
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 6.4e-41 171.4 149 59.1
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 8.3e-41 171.0 138 60.1
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 8.3e-41 171.0 139 64.0
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 8.3e-41 171.0 139 64.0
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 8.3e-41 171.0 139 64.0
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 8.3e-41 171.0 143 60.1
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 1.1e-40 170.6 161 55.9
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 1.1e-40 170.6 137 63.5
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.1e-40 170.6 161 55.3
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.1e-40 170.6 138 60.1
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.1e-40 170.6 138 60.1
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 1.9e-40 169.9 139 64.0
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 1.9e-40 169.9 141 60.3
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 2.4e-40 169.5 138 60.1
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 2.4e-40 169.5 143 59.4
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.2e-40 169.1 136 63.2
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 3.2e-40 169.1 143 59.4
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 4.1e-40 168.7 130 63.1
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 5.4e-40 168.3 182 49.5
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 5.4e-40 168.3 138 60.1
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 9.2e-40 167.5 172 52.9
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 9.2e-40 167.5 134 60.4
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.2e-39 167.2 134 61.9
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.6e-39 166.8 138 59.4
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.6e-39 166.8 134 59.0
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 2.1e-39 166.4 138 61.6
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 2.1e-39 166.4 143 58.0
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 2.7e-39 166.0 175 52.6
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 3.5e-39 165.6 173 50.9
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 3.5e-39 165.6 173 50.9
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 3.5e-39 165.6 138 60.9
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 6.0e-39 164.9 134 62.7
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 6.0e-39 164.9 140 59.3
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 6.0e-39 164.9 140 60.0
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 7.8e-39 164.5 140 60.0
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 7.8e-39 164.5 139 60.4
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 1.0e-38 164.1 141 59.6
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 1.0e-38 164.1 139 59.0
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 2.3e-38 162.9 117 67.5
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 3.0e-38 162.5 131 60.3
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 3.9e-38 162.2 141 57.4
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 5.1e-38 161.8 178 49.4
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 8.6e-38 161.0 132 59.1
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 1.1e-37 160.6 119 63.9
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.1e-37 160.6 133 59.4
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.1e-37 160.6 133 59.4
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 1.5e-37 160.2 132 61.4
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 1.5e-37 160.2 137 61.3
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.9e-37 159.8 130 61.5
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 1.9e-37 159.8 139 59.0
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 4.3e-37 158.7 143 57.3
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 5.6e-37 158.3 139 56.8
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 7.3e-37 157.9 129 58.9
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 1.2e-36 157.1 141 59.6
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 1.6e-36 156.8 132 59.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 2.8e-36 156.0 142 56.3
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 6.2e-36 154.8 190 47.9
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 8.1e-36 154.5 119 64.7
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 8.1e-36 154.5 119 64.7
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.1e-35 154.1 109 63.3
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 1.8e-35 153.3 161 52.2
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 5.2e-35 151.8 135 57.8
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 6.8e-35 151.4 130 56.9
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.0e-34 149.8 121 58.7
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 2.6e-34 149.4 130 55.4
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 2.6e-34 149.4 134 57.5
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 7.6e-34 147.9 134 56.7
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 9.9e-34 147.5 111 63.1
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 2.2e-33 146.4 111 62.2
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 4.9e-33 145.2 111 62.2
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 4.9e-33 145.2 111 62.2
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.4e-32 143.7 123 58.5
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 2.4e-32 142.9 110 61.8
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.2e-31 140.6 112 61.6
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 1.0e-30 137.5 137 50.4
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.7e-25 120.2 93 55.9
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 4.9e-25 118.6 134 47.8
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 1.6e-20 103.6 79 55.7
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 3.4e-18 95.9 121 43.0
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 4.5e-18 95.5 85 55.3
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.7e-17 93.6 70 67.1
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 2.2e-17 93.2 103 46.6
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 5.6e-13 78.6 71 54.9
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 1.4e-11 73.9 75 46.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.7e-06 54.7 52 61.5


User provided reference genes

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