Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 3.0e-259 897.9 423 100.0
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 8.8e-110 401.4 328 57.9
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.7e-97 360.5 329 52.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.3e-94 350.1 332 51.5
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.7e-92 342.8 333 49.5
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.9e-92 342.4 330 51.2
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.4e-91 340.1 339 50.1
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 5.4e-91 339.0 326 50.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 7.8e-90 335.1 333 49.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.3e-89 334.3 331 48.9
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.7e-89 334.0 322 51.2
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.9e-89 333.2 337 51.3
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.9e-89 333.2 333 48.6
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.8e-89 332.8 328 50.9
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 5.0e-89 332.4 293 53.9
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 6.6e-89 332.0 327 49.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.6e-89 332.0 333 49.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.1e-88 331.3 339 49.6
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-88 331.3 327 49.8
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.9e-88 330.5 326 49.4
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.3e-88 329.7 336 49.4
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 4.3e-88 329.3 331 49.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 5.6e-88 328.9 331 49.8
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 7.3e-88 328.6 339 49.3
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 7.3e-88 328.6 333 49.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 9.5e-88 328.2 328 49.7
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.6e-87 327.4 330 48.8
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.1e-87 327.0 332 48.5
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 2.1e-87 327.0 327 47.4
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.8e-87 326.6 333 48.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 2.8e-87 326.6 323 49.5
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.6e-87 326.2 327 49.2
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.6e-87 326.2 333 48.9
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.7e-87 325.9 325 49.8
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.7e-87 325.9 330 49.4
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 4.7e-87 325.9 334 49.7
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 4.7e-87 325.9 334 47.3
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 6.1e-87 325.5 333 48.6
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 6.1e-87 325.5 328 48.8
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.0e-86 324.7 333 48.9
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.4e-86 324.3 328 49.1
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.4e-86 324.3 333 49.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.4e-86 324.3 325 48.9
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.8e-86 323.9 328 48.5
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-86 323.9 333 49.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.8e-86 323.9 323 49.8
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.8e-86 323.9 328 48.2
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.3e-86 323.6 336 49.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.3e-86 323.6 333 47.7
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.3e-86 323.6 330 47.9
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 4.0e-86 322.8 330 48.2
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 5.2e-86 322.4 327 48.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.2e-86 322.4 333 47.7
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 5.2e-86 322.4 333 48.3
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.2e-86 322.4 335 48.1
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.2e-86 322.4 301 52.2
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 8.9e-86 321.6 336 46.1
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-85 321.2 331 47.4
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.0e-85 320.5 327 48.6
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.0e-85 320.5 325 47.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.0e-85 320.5 322 48.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.6e-85 320.1 325 47.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 3.4e-85 319.7 328 48.5
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 4.4e-85 319.3 327 48.9
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.4e-85 319.3 333 47.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.8e-85 318.9 328 46.6
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 5.8e-85 318.9 327 46.8
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 9.8e-85 318.2 325 47.1
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 9.8e-85 318.2 325 47.4
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 9.8e-85 318.2 334 47.6
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 9.8e-85 318.2 327 48.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.9e-84 316.6 326 48.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.9e-84 316.6 326 48.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.7e-84 316.2 322 49.1
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 3.7e-84 316.2 334 47.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.9e-84 315.8 334 47.3
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 8.3e-84 315.1 327 47.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.4e-83 314.3 325 46.8
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.9e-83 313.9 322 48.8
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.9e-83 313.9 335 45.7
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.4e-83 313.5 333 47.1
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.4e-83 313.5 301 50.5
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 2.4e-83 313.5 330 46.7
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.0e-83 312.0 325 45.5
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-82 311.2 325 48.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-82 311.2 325 47.1
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.7e-82 310.1 325 47.7
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 6.0e-82 308.9 325 46.2
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 7.8e-82 308.5 325 46.5
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.3e-81 307.8 325 45.5
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.0e-81 306.6 324 47.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.0e-81 306.6 381 44.4
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.6e-81 305.4 325 46.8
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.6e-81 305.1 351 43.9
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.1e-80 304.7 323 47.1
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.5e-80 304.3 322 46.0
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.9e-80 303.9 324 46.3
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 4.3e-80 302.8 336 46.7
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.6e-80 302.4 331 46.2
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.5e-80 301.6 328 46.6
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.6e-79 300.8 295 49.8
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.1e-79 300.4 335 45.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-79 299.7 341 44.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 2.3e-78 297.0 346 44.2
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-77 294.7 325 44.6
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.5e-77 294.3 325 44.9
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 8.3e-76 288.5 325 44.3
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-75 287.7 325 44.3
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-75 287.0 325 44.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.1e-75 286.2 290 50.3
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.1e-75 286.2 182 65.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 7.0e-75 285.4 322 43.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.0e-75 285.4 183 67.2
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 9.2e-75 285.0 322 43.8
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 9.2e-75 285.0 322 44.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 9.2e-75 285.0 322 44.1
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.5e-74 283.1 322 43.8
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.5e-74 283.1 338 44.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.3e-73 280.4 183 65.6
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.9e-73 279.6 322 44.4
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.1e-73 279.3 287 48.8
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.6e-73 278.5 327 42.2
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.5e-72 276.9 310 45.5
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 3.3e-72 276.6 194 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 4.3e-72 276.2 331 44.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.6e-71 274.2 332 42.8
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.1e-71 273.9 328 45.4
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.2e-71 272.3 335 41.5
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 8.1e-71 271.9 328 43.9
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 8.1e-71 271.9 292 46.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 6.8e-70 268.9 375 38.1
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 1.1e-67 261.5 323 41.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-66 258.1 309 44.3
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.5e-66 256.5 307 43.0
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.0e-65 255.0 304 43.4
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.7e-65 254.2 330 39.7
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.1e-65 252.7 307 45.9
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.1e-64 251.5 328 39.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-64 250.8 336 41.4
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 3.3e-64 250.0 335 41.5
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 4.3e-64 249.6 331 39.6
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-63 248.1 328 38.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.4e-62 244.6 330 37.6
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.8e-62 244.2 334 38.3
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.4e-62 243.8 335 37.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.1e-62 243.4 325 39.1
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 5.2e-62 242.7 336 39.3
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.6e-61 240.4 339 38.9
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.8e-61 239.2 332 38.3
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-60 238.0 270 45.2
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.2e-60 237.3 325 40.0
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.8e-60 236.5 331 37.5
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.3e-56 223.0 325 41.2
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-55 219.9 286 39.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.2e-51 206.8 278 41.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 4.6e-50 203.0 330 34.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-48 197.6 341 33.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.3e-48 196.4 325 39.1
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 8.1e-47 192.2 183 44.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-46 191.8 141 57.4
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.1e-39 167.5 94 76.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 5.8e-37 159.5 196 38.8
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 2.0e-29 134.4 68 82.4
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.7e-28 131.3 68 82.4
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.4e-14 85.1 120 34.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.9e-12 77.4 38 84.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.8e-12 77.0 48 66.7
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.3e-09 67.8 110 37.3
SMO203G0166 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 8.8e-09 65.9 70 41.4


User provided reference genes

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