Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 2.8e-147 525.4 295 100.0
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 5.1e-32 142.5 172 55.2
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.1e-23 114.8 135 48.1
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 1.7e-22 110.9 132 45.5
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.7e-22 110.9 132 45.5
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.8e-22 110.2 132 47.7
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 3.7e-22 109.8 132 44.7
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 4.8e-22 109.4 135 46.7
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 6.3e-22 109.0 129 45.0
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 8.2e-22 108.6 133 43.6
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 1.8e-21 107.5 133 45.9
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 1.8e-21 107.5 126 47.6
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 2.4e-21 107.1 127 48.0
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 4.1e-21 106.3 123 48.0
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 5.3e-21 105.9 135 44.4
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 2.0e-20 104.0 132 43.2
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 3.5e-20 103.2 132 43.2
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 5.9e-20 102.4 122 45.9
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 1.3e-19 101.3 127 41.7
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.3e-19 101.3 135 42.2
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 3.8e-19 99.8 133 42.9
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 5.0e-19 99.4 135 41.5
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 8.5e-19 98.6 127 43.3
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 8.5e-19 98.6 139 41.7
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 1.1e-18 98.2 139 41.7
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 1.9e-18 97.4 130 43.8
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.9e-18 97.4 129 43.4
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 2.5e-18 97.1 133 38.3
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 4.2e-18 96.3 128 42.2
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 4.2e-18 96.3 133 39.8
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 4.2e-18 96.3 128 44.5
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 4.2e-18 96.3 130 42.3
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 5.5e-18 95.9 143 39.2
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 5.5e-18 95.9 131 40.5
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 7.2e-18 95.5 118 44.1
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 9.4e-18 95.1 133 39.1
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 9.4e-18 95.1 133 39.1
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.2e-17 94.7 146 40.4
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 1.2e-17 94.7 131 42.0
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 1.2e-17 94.7 151 40.4
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 1.2e-17 94.7 130 43.1
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 2.1e-17 94.0 127 44.1
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 2.1e-17 94.0 141 39.7
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 2.1e-17 94.0 134 41.8
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 2.1e-17 94.0 166 38.0
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 2.7e-17 93.6 132 40.2
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 2.7e-17 93.6 156 37.8
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 3.6e-17 93.2 134 39.6
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 3.6e-17 93.2 135 38.5
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 3.6e-17 93.2 135 39.3
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 4.7e-17 92.8 145 39.3
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 4.7e-17 92.8 126 43.7
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 6.1e-17 92.4 138 43.5
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 8.0e-17 92.0 142 40.1
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 1.0e-16 91.7 130 37.7
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 1.4e-16 91.3 145 37.2
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.8e-16 90.9 128 43.8
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 3.0e-16 90.1 125 42.4
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 4.0e-16 89.7 133 39.1
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 5.2e-16 89.4 143 40.6
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 5.2e-16 89.4 143 40.6
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 5.2e-16 89.4 125 42.4
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 6.8e-16 89.0 148 35.8
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 8.8e-16 88.6 128 44.5
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 1.2e-15 88.2 135 36.3
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 1.5e-15 87.8 136 39.0
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 1.5e-15 87.8 136 39.0
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.5e-15 87.8 141 37.6
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 1.5e-15 87.8 127 39.4
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 2.0e-15 87.4 127 37.8
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 2.0e-15 87.4 126 43.7
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 2.0e-15 87.4 127 38.6
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 3.4e-15 86.7 126 40.5
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 4.4e-15 86.3 125 42.4
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 4.4e-15 86.3 130 42.3
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 4.4e-15 86.3 141 36.9
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 5.7e-15 85.9 141 36.9
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 7.5e-15 85.5 125 40.0
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 7.5e-15 85.5 128 34.4
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 7.5e-15 85.5 141 36.9
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 9.7e-15 85.1 127 38.6
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 1.7e-14 84.3 128 34.4
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 4.8e-14 82.8 114 42.1
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 6.3e-14 82.4 128 41.4
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 8.3e-14 82.0 129 40.3
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 1.4e-13 81.3 131 38.2
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.4e-13 81.3 137 36.5
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 2.4e-13 80.5 125 39.2
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 2.4e-13 80.5 125 39.2
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 2.4e-13 80.5 129 37.2
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 9.1e-13 78.6 142 37.3
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 9.1e-13 78.6 121 38.0
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 1.2e-12 78.2 147 33.3
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 2.0e-12 77.4 122 39.3
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 2.0e-12 77.4 139 33.8
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 2.7e-12 77.0 140 37.1
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 4.5e-12 76.3 186 32.3
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.7e-12 75.5 143 36.4
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 2.9e-11 73.6 129 38.8
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 3.8e-11 73.2 130 36.2
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 6.5e-11 72.4 109 41.3
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 8.5e-11 72.0 137 36.5
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.5e-10 71.2 158 34.8
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 5.5e-10 69.3 137 37.2
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 7.2e-10 68.9 127 37.8
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 1.2e-09 68.2 137 35.8
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 1.2e-09 68.2 137 35.8
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 1.6e-09 67.8 103 40.8
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 2.1e-09 67.4 137 36.5
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 2.1e-09 67.4 137 36.5
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 2.7e-09 67.0 137 36.5
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 2.7e-09 67.0 137 36.5
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 2.7e-09 67.0 137 36.5
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 2.7e-09 67.0 121 35.5
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.7e-09 67.0 128 35.2
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 3.6e-09 66.6 115 34.8
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 4.7e-09 66.2 137 35.0
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.8e-08 64.3 140 35.7
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 2.3e-08 63.9 137 35.0
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 5.2e-08 62.8 55 49.1
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 3.4e-07 60.1 136 33.1
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 4.4e-07 59.7 61 47.5
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 1.3e-06 58.2 120 34.2
CsaV3_4G004490 Cucumis sativus L. HOM05D002819 ORTHO05D003207 2.8e-06 57.0 126 34.9
Eucgr.G01794 Eucalyptus grandis HOM05D002819 ORTHO05D003207 2.8e-06 57.0 119 35.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 3.7e-06 56.6 153 31.4
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 3.7e-06 56.6 49 51.0
Eucgr.L02108 Eucalyptus grandis HOM05D002819 ORTHO05D003207 3.7e-06 56.6 119 34.5
Dinv29175 Davidia involucrata HOM05D002819 ORTHO05D003207 8.3e-06 55.5 117 34.2
Hma1.2p1_0758F.1_g213570 Hydrangea macrophylla HOM05D002819 ORTHO05D003207 8.3e-06 55.5 129 34.9
Sabra19G0057500 Salix brachista HOM05D002819 ORTHO05D003207 8.3e-06 55.5 122 35.2
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.3e-06 55.5 125 33.6


User provided reference genes

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