Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.5e-87 326.2 177 100.0
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 8.2e-17 91.3 61 83.6
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 5.3e-16 88.6 61 78.7
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 1.4e-13 80.5 49 83.7
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 7.2e-13 78.2 66 68.2
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 3.5e-12 75.9 57 70.2
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 4.6e-12 75.5 52 76.9
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 6.1e-12 75.1 66 65.2
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 1.0e-11 74.3 58 69.0
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.3e-11 73.9 54 75.9
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 2.3e-11 73.2 66 63.6
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 3.0e-11 72.8 52 75.0
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 3.0e-11 72.8 61 73.8
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 3.0e-11 72.8 52 71.2
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 3.9e-11 72.4 56 75.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 6.7e-11 71.6 70 64.3
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.1e-10 70.9 65 63.1
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.1e-10 70.9 56 75.0
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.5e-10 70.5 56 71.4
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.5e-10 70.5 56 71.4
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 1.9e-10 70.1 51 74.5
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.5e-10 69.7 56 71.4
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 3.3e-10 69.3 54 68.5
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 9.7e-10 67.8 47 72.3
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 9.7e-10 67.8 52 67.3
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 1.6e-09 67.0 47 72.3
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.6e-09 67.0 56 69.6
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.2e-09 66.6 56 69.6
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.8e-09 66.2 56 66.1
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 2.8e-09 66.2 47 68.1
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 2.8e-09 66.2 57 66.7
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.7e-09 65.9 56 67.9
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 3.7e-09 65.9 56 67.9
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 4.8e-09 65.5 47 72.3
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 8.2e-09 64.7 63 58.7
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 8.2e-09 64.7 48 75.0
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 1.1e-08 64.3 53 64.2
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 1.4e-08 63.9 47 66.0
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.8e-08 63.5 56 66.1
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 1.8e-08 63.5 44 68.2
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 2.4e-08 63.2 60 58.3
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 4.1e-08 62.4 47 68.1
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 4.1e-08 62.4 58 60.3
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 4.1e-08 62.4 52 69.2
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 4.1e-08 62.4 52 69.2
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 5.3e-08 62.0 49 61.2
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 9.0e-08 61.2 66 57.6
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 9.0e-08 61.2 52 67.3
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 9.0e-08 61.2 52 67.3
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.2e-07 60.8 57 61.4
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 1.2e-07 60.8 52 67.3
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 1.5e-07 60.5 48 68.8
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 4.5e-07 58.9 49 57.1
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 5.9e-07 58.5 52 63.5
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 1.3e-06 57.4 61 57.4
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 2.2e-06 56.6 40 67.5
Glyma.15G084900 Glycine max HOM05D007891 ORTHO05D009992 5.0e-06 55.5 50 62.0
Nn1g03657 Nelumbo nucifera HOM05D007891 ORTHO05D009992 5.0e-06 55.5 39 69.2
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 8.5e-06 54.7 61 54.1
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 8.5e-06 54.7 61 54.1


User provided reference genes

Program Settings