Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 8.7e-304 1046.2 542 100.0
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.0e-268 928.7 539 89.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 4.3e-186 655.2 486 65.8
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 3.4e-183 645.6 504 63.5
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 8.5e-182 641.0 485 63.5
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.1e-181 640.6 549 59.6
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-181 640.2 478 65.5
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-181 640.2 478 65.5
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.5e-181 639.4 480 65.4
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.5e-181 639.4 480 65.4
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 5.5e-181 638.3 473 65.1
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.2e-180 637.1 514 61.3
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.1e-180 634.8 505 62.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.9e-180 634.4 505 62.2
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 5.1e-179 631.7 478 64.6
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 6.7e-179 631.3 480 65.2
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 8.8e-179 630.9 477 63.9
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.1e-178 630.6 496 62.5
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.1e-178 630.6 481 63.6
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.5e-178 630.2 472 65.9
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.5e-178 630.2 462 67.1
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.0e-178 629.8 498 62.4
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 2.0e-178 629.8 469 64.8
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.5e-178 629.4 475 64.8
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 2.2e-177 626.3 493 62.5
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.2e-177 626.3 533 59.1
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 2.2e-177 626.3 529 59.5
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 2.8e-177 625.9 477 63.9
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.8e-177 625.9 553 58.4
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 4.8e-177 625.2 476 63.2
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 4.8e-177 625.2 482 65.8
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 4.8e-177 625.2 477 64.2
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.3e-177 624.8 461 65.1
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 6.3e-177 624.8 484 63.0
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 6.3e-177 624.8 472 64.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 8.2e-177 624.4 475 63.8
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-176 624.0 493 62.3
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 2.4e-176 622.9 472 63.3
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.4e-176 622.9 461 64.6
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 3.1e-176 622.5 472 64.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 4.1e-176 622.1 472 63.6
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.1e-176 622.1 488 61.1
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 4.1e-176 622.1 475 63.4
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 5.3e-176 621.7 472 65.7
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 5.3e-176 621.7 470 64.3
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 6.9e-176 621.3 478 63.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.2e-175 620.5 474 64.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.0e-175 619.8 471 64.1
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.6e-175 619.4 472 63.6
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.6e-175 619.4 551 57.2
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.4e-175 619.0 472 62.9
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.4e-175 619.0 466 64.4
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 4.5e-175 618.6 474 64.3
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 4.5e-175 618.6 477 62.7
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 5.9e-175 618.2 475 63.6
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 5.9e-175 618.2 479 62.8
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 5.9e-175 618.2 473 63.6
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 7.7e-175 617.8 474 63.9
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.3e-174 617.1 474 64.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.0e-174 615.1 484 62.2
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 6.5e-174 614.8 510 60.6
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 6.5e-174 614.8 483 62.3
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 6.5e-174 614.8 475 63.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.1e-173 614.0 475 63.2
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.2e-173 612.5 461 64.6
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.6e-172 610.1 472 62.9
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.1e-172 609.8 477 62.3
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 2.1e-172 609.8 482 62.0
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 6.1e-172 608.2 469 63.3
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 7.9e-172 607.8 469 62.5
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.0e-171 607.4 466 62.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 1.0e-171 607.4 471 62.8
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 2.3e-171 606.3 478 61.7
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.0e-171 605.9 477 61.6
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.1e-171 605.1 481 59.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.1e-170 604.0 481 61.7
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.0e-170 603.2 516 59.5
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.6e-170 602.8 466 63.9
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 7.4e-170 601.3 562 55.7
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 7.4e-170 601.3 469 61.4
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 4.8e-169 598.6 480 60.0
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 4.1e-168 595.5 478 59.8
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 7.0e-168 594.7 529 57.7
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 7.0e-168 594.7 470 61.3
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.9e-167 591.7 461 61.6
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.7e-167 591.3 439 66.3
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.3e-166 590.5 473 62.2
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.7e-166 590.1 473 61.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.1e-165 587.4 464 61.4
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.1e-164 581.6 481 59.3
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.0e-164 581.3 481 58.2
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.4e-163 580.5 481 59.0
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.8e-163 580.1 500 57.0
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.2e-163 578.6 499 56.9
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 8.8e-163 577.8 461 59.7
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.3e-162 575.9 476 59.0
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 7.5e-162 574.7 452 63.1
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.8e-161 572.8 494 57.3
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.1e-160 570.9 527 55.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 3.1e-160 569.3 525 56.0
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.7e-158 563.5 453 62.0
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.7e-158 563.5 431 63.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.8e-158 562.4 525 55.2
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.6e-156 555.8 482 58.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.0e-154 550.1 481 55.7
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.4e-152 543.9 410 63.7
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 2.6e-146 523.1 398 65.1
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.6e-146 523.1 481 53.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 4.4e-146 522.3 476 54.2
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.3e-145 520.8 483 55.1
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 1.1e-144 517.7 478 56.3
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 5.6e-141 505.4 502 52.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.5e-138 497.3 472 54.4
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 4.1e-136 489.2 435 57.2
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 2.7e-135 486.5 496 50.0
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 7.8e-135 485.0 492 50.2
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.0e-131 474.6 481 52.2
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 6.4e-129 465.3 512 48.2
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 7.3e-117 425.2 505 45.9
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 9.5e-117 424.9 309 67.0
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.1e-115 421.4 440 50.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.4e-112 410.2 319 62.4
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.9e-105 386.7 383 55.1
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 2.8e-52 210.7 468 29.3
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.0e-46 192.2 164 59.1
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 5.4e-35 153.3 424 25.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.2e-32 144.1 130 57.7
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.4e-22 112.1 106 55.7
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 8.3e-20 102.8 80 67.5
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.0e-17 95.9 392 28.3
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 3.0e-17 94.4 69 59.4
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 3.1e-14 84.3 428 25.9
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.9e-08 65.1 64 50.0


User provided reference genes

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