Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.8e-124 448.4 254 100.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 7.4e-104 380.9 252 86.5
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.8e-95 352.4 268 80.6
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.2e-67 258.8 246 58.1
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.0e-65 252.7 246 55.3
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.5e-64 250.4 245 55.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.5e-64 250.4 245 55.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.6e-64 249.6 247 56.7
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 3.4e-64 249.2 246 56.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 7.5e-64 248.1 246 54.5
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 7.5e-64 248.1 248 54.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.5e-64 248.1 247 56.3
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 9.8e-64 247.7 246 54.9
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.3e-63 247.3 248 54.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.2e-63 246.5 252 54.8
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.2e-63 246.5 245 55.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.7e-63 245.7 253 53.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.7e-63 245.7 249 56.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.9e-63 245.4 249 56.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.9e-63 245.4 248 54.4
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 8.3e-63 244.6 247 53.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.3e-63 244.6 243 55.1
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 8.3e-63 244.6 239 56.1
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-62 244.2 249 55.8
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.1e-62 244.2 242 53.7
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.1e-62 244.2 248 58.1
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.4e-62 243.8 249 55.0
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.4e-62 243.8 250 55.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.4e-62 243.8 249 55.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.8e-62 243.4 245 54.3
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.8e-62 243.4 246 54.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.4e-62 243.0 245 54.3
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.4e-62 243.0 247 53.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.1e-62 242.7 248 56.9
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.1e-62 242.7 248 54.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.1e-62 242.3 247 52.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-62 242.3 247 56.3
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.4e-62 241.9 246 54.1
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 7.0e-62 241.5 249 55.8
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 7.0e-62 241.5 248 56.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.0e-62 241.5 248 56.9
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.0e-62 241.5 248 56.9
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.0e-62 241.5 248 56.9
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-62 241.5 249 53.8
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 7.0e-62 241.5 246 54.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 9.2e-62 241.1 245 54.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 9.2e-62 241.1 244 52.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-61 240.7 246 55.3
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.6e-61 240.4 247 52.2
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.7e-61 239.6 248 53.2
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.5e-61 239.2 247 53.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.5e-61 239.2 246 51.6
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.5e-61 238.8 249 53.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.5e-61 238.8 249 53.4
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 7.7e-61 238.0 249 53.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 7.7e-61 238.0 244 52.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.0e-60 237.7 249 53.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.3e-60 237.3 247 53.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-60 237.3 257 52.9
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-60 236.9 252 51.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.7e-60 236.9 253 55.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.9e-60 236.1 242 52.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.9e-60 236.1 243 53.1
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.8e-60 235.7 257 52.1
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.0e-60 235.3 256 51.2
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 6.6e-60 235.0 246 53.7
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.1e-59 234.2 248 53.6
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.5e-59 233.8 247 51.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-59 233.4 247 53.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.3e-59 232.3 248 52.4
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.3e-59 232.3 248 55.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.3e-59 232.3 263 51.7
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 7.3e-59 231.5 241 49.8
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 9.5e-59 231.1 255 52.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.6e-58 230.3 249 54.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.6e-58 230.3 239 52.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.1e-58 229.9 245 52.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.8e-58 229.6 246 51.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.6e-58 229.2 242 51.2
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.0e-58 228.0 245 51.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.0e-58 228.0 240 52.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 8.0e-58 228.0 251 53.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.0e-57 227.6 273 50.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.8e-57 226.9 249 53.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.3e-57 226.5 194 60.8
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.0e-57 226.1 246 50.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.0e-57 226.1 258 50.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.0e-57 226.1 243 49.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.0e-57 225.7 243 51.9
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.0e-57 225.7 240 51.7
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.0e-57 225.7 254 48.8
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 5.2e-57 225.3 245 52.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.2e-57 225.3 243 50.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 5.2e-57 225.3 244 50.0
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 5.2e-57 225.3 240 49.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.8e-57 224.9 246 50.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 8.9e-57 224.6 251 51.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 8.9e-57 224.6 251 51.4
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.5e-56 223.8 240 51.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.5e-56 223.8 242 49.6
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.0e-56 223.4 244 49.6
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.0e-56 223.4 245 50.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.6e-56 223.0 241 49.8
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.6e-56 223.0 241 49.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.6e-56 223.0 249 49.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 4.4e-56 222.2 244 50.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 9.8e-56 221.1 244 54.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 9.8e-56 221.1 244 54.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 9.8e-56 221.1 244 54.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-55 220.7 229 53.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-55 220.7 243 49.0
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.3e-55 220.7 195 59.0
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.7e-55 220.3 235 51.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.9e-55 219.5 244 54.5
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.9e-55 219.5 244 49.6
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 4.9e-55 218.8 244 51.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.4e-55 218.4 235 51.5
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 8.3e-55 218.0 314 43.3
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-54 217.6 194 57.7
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.4e-54 217.2 231 54.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.2e-54 216.1 240 48.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-54 215.3 235 51.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.6e-53 213.8 255 48.6
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-53 213.0 249 49.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.7e-53 213.0 247 51.0
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.7e-53 213.0 239 49.8
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.7e-53 213.0 251 49.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 3.5e-53 212.6 240 50.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.3e-52 209.9 247 49.8
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 6.6e-52 208.4 230 51.7
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.6e-52 208.0 242 50.0
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.5e-51 207.2 244 47.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.3e-51 206.1 233 50.6
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.7e-50 202.2 216 51.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.2e-50 201.8 151 64.2
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 8.0e-50 201.4 147 66.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.4e-49 200.7 246 48.4
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.4e-48 196.1 320 42.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.8e-48 195.3 237 48.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.4e-46 190.7 136 65.4
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.6e-44 181.4 227 47.1
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.2e-42 177.6 295 39.3
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-39 166.8 151 57.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.7e-39 166.0 151 55.6
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.7e-39 166.0 213 46.5
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.1e-38 162.5 230 42.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 5.1e-36 155.6 112 65.2
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.9e-35 153.7 117 64.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.0e-33 146.0 265 35.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.0e-33 146.0 266 37.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-33 145.2 192 47.9
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 4.1e-30 136.0 194 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.6e-26 124.0 99 53.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.2e-21 107.8 95 51.6
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.0e-20 103.2 91 48.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 7.3e-19 98.6 123 38.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.9e-15 86.7 68 57.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.4e-14 82.4 93 39.8
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-11 73.9 124 41.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-10 70.9 128 42.2
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.4e-09 67.0 160 30.6
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.9e-09 65.5 60 55.0
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.2e-06 56.2 71 49.3


User provided reference genes

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