Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.6e-211 737.6 378 100.0
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.2e-173 612.5 358 86.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.0e-133 480.7 368 64.9
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.1e-130 470.7 370 65.4
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.8e-130 469.9 368 63.9
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.0e-130 468.8 368 63.9
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 6.9e-130 468.0 363 63.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 8.9e-130 467.6 370 63.0
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 7.6e-129 464.5 363 63.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 9.9e-129 464.2 359 64.3
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.7e-128 463.4 358 64.0
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.7e-128 463.4 357 63.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.2e-128 463.0 368 63.0
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 6.4e-128 461.5 359 64.6
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.1e-127 460.7 357 62.7
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.4e-127 460.3 357 62.2
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.9e-127 459.9 358 64.8
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.9e-127 459.9 357 63.3
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.4e-127 459.5 357 62.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-127 458.8 363 62.0
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 4.2e-127 458.8 359 63.8
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 5.4e-127 458.4 357 63.6
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 5.4e-127 458.4 358 63.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.3e-127 457.6 359 64.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-127 457.6 359 64.1
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.6e-126 456.8 402 60.9
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 2.7e-126 456.1 358 63.4
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.7e-126 456.1 357 61.6
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.7e-126 456.1 413 58.4
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 4.6e-126 455.3 359 62.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 6.0e-126 454.9 369 61.0
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 7.8e-126 454.5 357 61.9
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.3e-125 453.0 373 61.4
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.0e-125 452.6 359 63.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.9e-125 452.2 370 62.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.9e-125 452.2 358 63.1
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.9e-125 452.2 356 63.2
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.9e-125 452.2 358 60.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 5.1e-125 451.8 357 63.3
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 5.1e-125 451.8 359 61.8
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.1e-125 451.8 359 63.2
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 6.6e-125 451.4 358 63.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.1e-124 450.7 358 62.8
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-124 450.7 365 61.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.5e-124 450.3 356 63.2
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.5e-124 450.3 358 62.0
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.5e-124 449.5 369 61.5
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.5e-124 449.5 359 61.6
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 4.3e-124 448.7 359 61.3
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 7.3e-124 448.0 357 62.2
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 7.3e-124 448.0 359 61.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.6e-123 446.8 357 62.7
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.6e-123 446.8 357 63.0
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.8e-123 445.3 356 61.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.8e-123 445.3 357 61.9
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 6.2e-123 444.9 357 60.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.1e-122 444.1 369 58.3
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-122 444.1 365 60.5
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.0e-122 442.2 357 61.1
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 6.9e-122 441.4 365 61.1
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.0e-122 441.0 369 60.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 9.0e-122 441.0 362 61.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.2e-121 440.7 370 62.4
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.5e-121 440.3 370 60.5
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.5e-121 440.3 356 62.6
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.0e-121 439.9 365 61.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.8e-121 438.3 359 62.7
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.8e-121 438.3 359 62.7
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 7.6e-121 438.0 362 60.5
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.9e-121 437.6 356 62.9
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.3e-120 437.2 358 61.7
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.2e-120 436.4 364 61.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 3.2e-119 432.6 362 60.2
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 9.3e-119 431.0 351 62.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-118 430.6 362 61.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.5e-118 429.1 383 57.4
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 6.0e-118 428.3 357 60.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-117 427.6 392 56.1
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.3e-117 427.2 356 60.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.8e-117 426.8 383 57.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 5.1e-117 425.2 365 60.5
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.4e-116 421.4 383 55.9
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.6e-115 420.2 359 60.4
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 3.6e-115 419.1 359 59.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.1e-114 417.5 357 58.5
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 4.0e-114 415.6 320 63.1
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.2e-113 414.1 326 62.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-113 414.1 359 58.2
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.3e-112 410.6 393 55.0
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-112 410.2 377 56.2
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.6e-110 402.1 364 57.4
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.6e-110 402.1 364 57.4
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 7.4e-108 394.8 320 62.5
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-105 387.5 356 54.8
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.0e-105 386.7 358 55.0
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.4e-105 386.0 373 55.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.5e-105 385.6 354 54.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.9e-104 382.9 358 56.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-103 380.6 358 55.0
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 9.3e-103 377.9 291 63.2
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.3e-100 369.4 304 60.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 7.4e-100 368.2 359 55.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 6.3e-99 365.2 318 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.1e-98 364.4 351 52.4
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.1e-98 364.4 358 55.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.6e-97 359.8 286 61.9
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 7.6e-97 358.2 294 60.5
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 5.5e-95 352.1 294 60.2
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 9.3e-95 351.3 316 57.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.8e-93 347.1 352 49.7
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.7e-93 345.1 301 58.8
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.1e-92 344.4 344 51.2
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.7e-92 342.0 383 50.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 9.7e-92 341.3 314 51.9
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 7.7e-89 331.6 336 49.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.7e-85 318.5 283 56.5
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.0e-84 317.0 360 49.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.1e-82 309.3 229 65.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 7.9e-78 295.0 380 44.7
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.5e-76 290.8 357 46.8
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.6e-76 290.0 358 46.4
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.3e-74 282.3 358 45.8
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.0e-66 255.4 154 78.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.9e-65 252.3 273 50.2
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 8.0e-62 241.9 328 38.4
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.1e-54 215.7 137 75.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 5.6e-47 192.6 379 31.9
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.3e-39 166.4 137 66.4
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 7.3e-39 165.6 344 32.3
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-32 144.8 140 54.3
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.4e-28 129.8 135 50.4
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.8e-28 129.4 201 37.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.3e-24 117.5 335 26.0
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-22 111.7 83 62.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-22 110.2 83 61.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.0e-20 104.4 112 52.7
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-18 98.6 110 50.9
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.7e-17 94.0 81 56.8
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-16 92.0 85 60.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-16 90.5 83 60.2
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 6.9e-13 79.3 106 42.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-12 78.6 106 42.5
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.6e-12 77.4 63 61.9
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 3.4e-12 77.0 109 44.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-11 72.8 75 56.0
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-10 71.2 99 47.5
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-10 70.9 74 55.4
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-10 70.5 73 56.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.4e-10 69.7 75 54.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.1e-10 69.3 74 54.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.1e-10 69.3 74 54.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.3e-10 68.9 74 54.1
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.2e-09 68.6 86 45.3
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.6e-09 66.6 75 54.7
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.6e-09 66.6 80 51.2
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.0e-09 66.2 87 46.0
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.8e-09 65.9 89 42.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-08 63.9 75 53.3


User provided reference genes

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