Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb247940 Zea mays HOM05D002969 ORTHO05D003308 4.8e-174 614.4 306 100.0
Zm00001eb254800 Zea mays HOM05D002969 ORTHO05D003308 4.8e-174 614.4 306 100.0
Zm00001eb254720 Zea mays HOM05D002969 ORTHO05D003308 1.2e-111 407.1 256 82.4
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 2.3e-107 392.9 307 67.8
Zm00001eb254760 Zea mays HOM05D002969 ORTHO05D003308 8.4e-86 321.2 158 98.7
Zm00001eb254630 Zea mays HOM05D002969 ORTHO05D003308 2.6e-47 193.4 97 97.9
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 1.3e-46 191.0 288 38.5
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 3.0e-43 179.9 306 38.6
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 6.7e-43 178.7 237 43.0
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 2.6e-42 176.8 291 39.9
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 4.4e-42 176.0 293 37.5
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 9.7e-42 174.9 237 42.6
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.7e-42 174.9 237 42.6
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.7e-42 174.9 237 42.6
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 3.7e-41 172.9 230 41.7
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 3.7e-41 172.9 285 38.9
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 4.8e-41 172.6 240 40.8
Dinv30673 Davidia involucrata HOM05D002969 ORTHO05D003308 6.3e-41 172.2 290 37.2
Dinv34333 Davidia involucrata HOM05D002969 ORTHO05D003308 6.3e-41 172.2 290 37.2
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 8.2e-41 171.8 220 45.5
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.4e-40 171.0 313 36.4
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 1.8e-40 170.6 294 37.4
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 2.4e-40 170.2 285 37.5
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.1e-40 169.9 237 41.8
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 5.3e-40 169.1 216 45.4
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 7.0e-40 168.7 228 43.0
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 7.0e-40 168.7 285 37.9
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 9.1e-40 168.3 288 36.1
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 1.2e-39 167.9 230 41.3
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 1.2e-39 167.9 288 39.2
PSO210G1276 Papaver somniferum HOM05D002969 ORTHO05D003308 1.2e-39 167.9 241 40.7
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 1.5e-39 167.5 241 40.2
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 2.0e-39 167.2 285 37.9
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.0e-39 167.2 288 35.8
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 2.6e-39 166.8 289 36.0
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.6e-39 166.8 288 36.5
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 3.5e-39 166.4 294 35.7
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 5.9e-39 165.6 306 37.3
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 7.7e-39 165.2 304 35.5
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 1.0e-38 164.9 286 38.1
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.0e-38 164.9 296 36.1
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 1.0e-38 164.9 308 37.3
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.3e-38 164.5 226 42.9
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 1.7e-38 164.1 290 35.5
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 2.2e-38 163.7 286 38.1
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 2.2e-38 163.7 286 38.1
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 2.2e-38 163.7 298 33.9
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 2.2e-38 163.7 303 36.3
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.9e-38 163.3 293 37.2
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 3.8e-38 162.9 238 40.3
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.0e-38 162.5 284 37.3
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.5e-37 161.0 282 38.3
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.9e-37 160.6 282 37.9
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 1.9e-37 160.6 187 46.5
vmacro15026 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.9e-37 160.6 292 35.3
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 2.5e-37 160.2 300 36.3
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 2.5e-37 160.2 150 51.3
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 3.2e-37 159.8 287 35.9
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 4.2e-37 159.5 283 35.0
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 4.2e-37 159.5 239 39.7
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 5.5e-37 159.1 225 42.7
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 5.5e-37 159.1 287 33.8
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 5.5e-37 159.1 225 42.7
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 7.2e-37 158.7 219 42.5
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 9.4e-37 158.3 225 42.2
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 9.4e-37 158.3 225 42.2
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 9.4e-37 158.3 297 37.7
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 1.6e-36 157.5 298 35.2
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.6e-36 157.5 227 41.9
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.1e-36 157.1 286 36.4
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 2.7e-36 156.8 227 42.3
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 3.6e-36 156.4 274 36.5
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 4.7e-36 156.0 243 40.3
Glyma.19G019300 Glycine max HOM05D002969 ORTHO05D003308 4.7e-36 156.0 217 42.9
PSO017G1981 Papaver somniferum HOM05D002969 ORTHO05D003308 4.7e-36 156.0 221 38.9
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 6.1e-36 155.6 234 38.9
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 1.0e-35 154.8 288 35.8
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 1.4e-35 154.5 286 34.3
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.4e-35 154.5 286 34.3
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 1.4e-35 154.5 284 37.0
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 2.3e-35 153.7 203 43.3
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 2.3e-35 153.7 282 34.8
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 3.0e-35 153.3 212 41.5
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 3.9e-35 152.9 300 34.7
AT1G58766 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.2e-35 152.5 226 39.8
AT1G59077 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.2e-35 152.5 226 39.8
AT1G59453 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.2e-35 152.5 226 39.8
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.1e-34 151.4 221 40.3
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 2.0e-34 150.6 295 35.6
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 3.3e-34 149.8 285 36.1
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 4.4e-34 149.4 285 34.7
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 5.7e-34 149.1 291 35.4
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 7.4e-34 148.7 228 39.5
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.2e-33 147.1 287 34.1
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.7e-33 146.4 228 38.2
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 8.2e-33 145.2 249 36.9
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 8.2e-33 145.2 221 40.7
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 8.2e-33 145.2 327 33.3
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 8.2e-33 145.2 312 33.7
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 1.8e-32 144.1 286 33.9
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 1.8e-32 144.1 101 80.2
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 4.1e-32 142.9 286 33.2
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 4.1e-32 142.9 295 33.6
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 5.3e-32 142.5 218 39.4
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 7.0e-32 142.1 290 33.8
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 1.2e-31 141.4 213 40.4
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 2.0e-31 140.6 249 35.7
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 2.0e-31 140.6 286 32.5
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 2.0e-31 140.6 283 30.4
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 2.6e-31 140.2 299 32.4
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 5.9e-31 139.0 223 38.1
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 7.7e-31 138.7 227 37.9
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.7e-30 137.5 226 37.2
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 6.5e-30 135.6 243 35.8
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 8.5e-30 135.2 346 30.1
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 8.5e-30 135.2 289 31.8
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 5.5e-29 132.5 244 35.7
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.2e-28 131.3 214 38.3
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 1.2e-26 124.8 238 35.3
CAN.G947.7 Capsicum annuum HOM05D002969 ORTHO05D000105 3.1e-24 116.7 199 37.7
Glyma.17G219802 Glycine max HOM05D002969 ORTHO05D003308 7.0e-24 115.5 151 45.0
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 7.0e-24 115.5 210 33.3
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.0e-23 114.0 234 34.6
Atru.chr4.3098 Acer truncatum HOM05D002969 ORTHO05D003308 1.3e-22 111.3 228 33.8
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.2e-22 110.5 230 30.0
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 2.9e-22 110.2 214 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 4.2e-21 106.3 213 33.3
vmacro15029 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.2e-20 104.8 166 38.0
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.6e-20 103.2 289 32.5
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 4.7e-20 102.8 151 41.7
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 4.0e-19 99.8 113 44.2
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 1.5e-18 97.8 238 30.7
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.7e-17 94.4 151 39.1
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 4.9e-17 92.8 294 30.6
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 1.0e-14 85.1 134 39.6
COL.COLO4_30697 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.8e-12 77.0 76 50.0
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 2.3e-11 73.9 120 39.2
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 5.2e-11 72.8 69 53.6
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 1.2e-10 71.6 87 44.8
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.5e-10 71.2 72 48.6
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.5e-10 71.2 110 40.0
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.6e-10 70.5 147 35.4
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 4.4e-10 69.7 68 51.5
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.8e-10 68.6 110 39.1
HPP92_011314 Vanilla planifolia HOM05D002969 ORTHO05D003308 1.1e-08 65.1 101 44.6
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 5.4e-08 62.8 60 46.7


User provided reference genes

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