Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 6.7e-46 187.6 142 100.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 7.2e-32 141.0 142 83.8
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 3.7e-20 102.1 90 61.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.4e-14 83.6 63 63.5
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.8e-14 83.2 80 53.8
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.8e-14 83.2 75 58.7
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.0e-14 82.0 47 76.6
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.0e-14 82.0 47 76.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.8e-14 81.3 62 64.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.8e-14 81.3 58 69.0
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 8.9e-14 80.9 55 72.7
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 8.9e-14 80.9 55 72.7
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.9e-14 80.9 55 67.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-13 80.5 98 48.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.2e-13 80.5 48 75.0
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.5e-13 80.1 49 73.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-13 80.1 47 74.5
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.5e-13 80.1 59 64.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.0e-13 79.7 62 58.1
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.0e-13 79.7 46 78.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.0e-13 79.7 54 72.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.6e-13 79.3 95 53.7
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.4e-13 79.0 49 73.5
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.4e-13 79.0 45 77.8
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.4e-13 79.0 48 72.9
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 3.4e-13 79.0 48 72.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-13 79.0 48 72.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.4e-13 79.0 48 72.9
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.4e-13 79.0 39 82.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.4e-13 79.0 91 50.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.4e-13 78.6 47 74.5
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 4.4e-13 78.6 47 74.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.4e-13 78.6 53 67.9
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 4.4e-13 78.6 51 70.6
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.4e-13 78.6 47 72.3
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 4.4e-13 78.6 45 80.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 4.4e-13 78.6 45 80.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.4e-13 78.6 90 53.3
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 5.7e-13 78.2 60 63.3
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.5e-13 77.8 47 74.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.5e-13 77.8 47 74.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 7.5e-13 77.8 82 53.7
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 7.5e-13 77.8 86 51.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 7.5e-13 77.8 39 82.1
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 7.5e-13 77.8 51 70.6
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 9.8e-13 77.4 40 82.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 9.8e-13 77.4 87 48.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 9.8e-13 77.4 69 58.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 9.8e-13 77.4 49 75.5
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 9.8e-13 77.4 49 75.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 9.8e-13 77.4 49 75.5
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 9.8e-13 77.4 47 74.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-12 77.0 39 84.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.3e-12 77.0 50 70.0
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.3e-12 77.0 39 84.6
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.3e-12 77.0 39 84.6
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.3e-12 77.0 39 84.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.3e-12 77.0 92 47.8
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.3e-12 77.0 39 84.6
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.7e-12 76.6 46 73.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.7e-12 76.6 91 49.5
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.7e-12 76.6 44 77.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.2e-12 76.3 74 55.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.2e-12 76.3 45 75.6
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.2e-12 76.3 43 79.1
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.2e-12 76.3 45 75.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.8e-12 75.9 44 77.3
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.8e-12 75.9 44 77.3
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-12 75.9 91 49.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 2.8e-12 75.9 89 49.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.8e-12 75.9 90 47.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 3.7e-12 75.5 96 50.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.7e-12 75.5 39 84.6
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.9e-12 75.1 42 81.0
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.9e-12 75.1 44 77.3
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.9e-12 75.1 91 48.4
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.9e-12 75.1 84 50.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 4.9e-12 75.1 96 47.9
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 4.9e-12 75.1 52 69.2
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 6.3e-12 74.7 77 50.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.3e-12 74.7 43 76.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 6.3e-12 74.7 91 51.6
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 6.3e-12 74.7 44 75.0
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 8.3e-12 74.3 99 49.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.3e-12 74.3 97 48.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 8.3e-12 74.3 96 49.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.3e-12 74.3 91 48.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.1e-11 73.9 44 75.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-11 73.9 50 70.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.1e-11 73.9 72 56.9
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.4e-11 73.6 45 73.3
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-11 73.6 91 48.4
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.4e-11 73.6 63 60.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.4e-11 73.6 66 56.1
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.4e-11 73.6 35 88.6
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-11 73.2 35 85.7
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-11 73.2 108 42.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.8e-11 73.2 46 71.7
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.8e-11 73.2 54 70.4
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.8e-11 73.2 46 73.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.8e-11 73.2 46 73.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-11 72.8 87 44.8
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.4e-11 72.8 59 64.4
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 3.1e-11 72.4 57 59.6
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 4.1e-11 72.0 43 74.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 4.1e-11 72.0 39 79.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.1e-11 72.0 48 64.6
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 5.4e-11 71.6 41 78.0
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 5.4e-11 71.6 41 78.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 5.4e-11 71.6 58 67.2
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 7.0e-11 71.2 42 73.8
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 7.0e-11 71.2 84 51.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 9.2e-11 70.9 34 88.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 9.2e-11 70.9 35 82.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.6e-10 70.1 51 62.7
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.6e-10 70.1 46 69.6
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.6e-10 70.1 34 85.3
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.6e-10 70.1 42 71.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.0e-10 69.7 35 82.9
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 7.8e-10 67.8 88 47.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 7.8e-10 67.8 40 77.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.3e-09 67.0 85 45.9
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.3e-09 66.2 63 54.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 8.6e-09 64.3 71 49.3
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 8.6e-09 64.3 91 42.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.6e-08 61.6 56 51.8


User provided reference genes

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