Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 5.8e-178 627.5 327 100.0
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 9.7e-173 610.1 326 96.0
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.0e-89 332.8 249 67.1
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.4e-86 323.2 326 53.7
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 8.1e-79 298.1 325 51.1
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 6.9e-78 295.0 327 48.3
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.3e-33 147.1 280 34.6
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 2.2e-28 130.6 354 30.5
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 6.5e-28 129.0 276 33.3
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 7.2e-27 125.6 313 30.4
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 1.2e-26 124.8 273 33.7
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.2e-26 124.8 273 31.9
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 4.7e-26 122.9 276 31.5
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.8e-25 120.9 323 29.1
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.2e-24 118.2 201 35.3
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.4e-24 116.3 277 31.0
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 7.5e-24 115.5 276 31.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 7.5e-24 115.5 237 35.9
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 9.8e-24 115.2 269 31.6
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.3e-23 114.8 278 33.1
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.7e-23 114.4 278 32.4
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 3.7e-23 113.2 280 32.5
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 4.8e-23 112.8 186 35.5
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 6.3e-23 112.5 278 31.7
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 6.3e-23 112.5 296 30.7
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.4e-22 111.3 285 29.5
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 1.4e-22 111.3 275 30.2
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 1.8e-22 110.9 290 29.3
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 1.8e-22 110.9 290 29.3
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.8e-22 110.9 278 32.4
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 2.4e-22 110.5 271 34.3
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 4.1e-22 109.8 285 30.2
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 5.4e-22 109.4 286 30.8
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 9.1e-22 108.6 272 31.2
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 9.1e-22 108.6 281 30.2
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 9.1e-22 108.6 203 30.0
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.6e-21 107.8 201 34.8
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 2.0e-21 107.5 272 30.9
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 2.0e-21 107.5 301 28.6
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 2.7e-21 107.1 271 33.6
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 3.5e-21 106.7 284 28.9
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 3.5e-21 106.7 237 34.2
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 5.9e-21 105.9 197 33.5
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.0e-20 105.1 279 30.8
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.0e-20 105.1 270 31.1
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.0e-20 105.1 278 30.6
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 1.0e-20 105.1 186 36.0
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.3e-20 104.8 206 33.0
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 2.9e-20 103.6 264 29.5
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 5.0e-20 102.8 277 29.6
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 5.0e-20 102.8 279 27.6
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 5.0e-20 102.8 182 33.5
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 6.5e-20 102.4 192 33.3
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.1e-19 101.7 205 31.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.1e-19 101.7 205 29.8
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.5e-19 100.5 213 31.5
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 2.5e-19 100.5 217 30.0
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 2.5e-19 100.5 217 30.4
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.5e-19 100.5 220 28.2
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.5e-19 100.5 279 27.6
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.2e-19 100.1 293 29.4
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 5.5e-19 99.4 203 33.5
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 7.2e-19 99.0 350 28.3
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 7.2e-19 99.0 311 28.0
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.2e-19 99.0 278 28.8
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 7.2e-19 99.0 278 29.1
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 9.4e-19 98.6 276 31.9
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.2e-18 98.2 297 29.3
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.2e-18 98.2 278 28.8
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 3.6e-18 96.7 183 34.4
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 4.7e-18 96.3 193 31.1
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.0e-17 95.1 268 26.9
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.0e-17 95.1 270 30.4
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.0e-17 95.1 328 27.7
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.4e-17 94.7 279 32.6
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.4e-17 94.7 306 27.8
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 2.3e-17 94.0 270 31.5
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 3.0e-17 93.6 310 27.7
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 4.0e-17 93.2 192 30.2
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.8e-17 92.4 303 25.7
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 6.8e-17 92.4 299 28.8
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 8.8e-17 92.0 317 25.9
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 2.6e-16 90.5 188 32.4
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 3.4e-16 90.1 277 30.0
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 5.7e-16 89.4 278 27.7
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 7.5e-16 89.0 247 31.2
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 7.5e-16 89.0 344 27.3
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.5e-16 89.0 268 29.1
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.7e-15 87.8 272 26.5
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.2e-15 87.4 207 29.0
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 2.2e-15 87.4 208 31.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 8.3e-15 85.5 286 28.0
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.1e-14 85.1 282 29.4
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.1e-14 85.1 281 28.5
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.4e-14 84.7 276 26.4
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 1.4e-14 84.7 187 31.6
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 1.4e-14 84.7 228 29.4
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 2.4e-14 84.0 289 27.0
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 3.1e-14 83.6 235 29.4
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.0e-13 80.9 281 27.8
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 5.9e-13 79.3 279 28.3
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.0e-12 78.6 281 30.2
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.0e-12 78.6 281 30.2
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.7e-12 77.8 345 29.3
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 2.3e-12 77.4 142 35.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 6.6e-12 75.9 336 25.6
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 1.5e-11 74.7 296 27.7
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.5e-11 74.7 133 36.1
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 3.3e-11 73.6 181 30.9
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 5.6e-11 72.8 342 26.6
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 7.2e-11 72.4 243 27.6
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 2.1e-10 70.9 186 31.2
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.8e-10 70.5 248 25.0
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 2.8e-10 70.5 248 25.0
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 2.8e-10 70.5 231 31.6
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 3.6e-10 70.1 174 32.2
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 4.7e-10 69.7 229 27.5
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.0e-09 68.6 273 23.8
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.0e-09 68.6 328 22.6
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 1.8e-09 67.8 279 26.9
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.0e-09 66.6 56 62.5
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 5.2e-09 66.2 261 26.8
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 6.8e-09 65.9 276 26.4
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.2e-08 65.1 243 29.2
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 2.6e-08 63.9 174 32.8
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 9.8e-08 62.0 263 27.0
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 1.3e-07 61.6 248 27.4
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 2.2e-07 60.8 128 34.4
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 6.4e-07 59.3 263 25.9
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 6.4e-07 59.3 263 25.9
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.8e-06 57.8 193 28.0


User provided reference genes

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