Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb246280 Zea mays HOM05D005797 ORTHO05D006479 0.0e+00 1912.1 953 100.0
Os02g0598200 Oryza sativa ssp. japonica HOM05D005797 ORTHO05D006479 2.9e-116 424.1 862 36.8
TAR629G0979 Trochodendron aralioides HOM05D005797 ORTHO05D006479 1.8e-22 112.5 627 24.4
HPP92_021432 Vanilla planifolia HOM05D022286 ORTHO05D006479 1.0e-20 106.7 615 23.9
MELO3C002331.2 Cucumis melo HOM05D005797 ORTHO05D006479 2.8e-18 98.6 641 21.8
Nn3g16589 Nelumbo nucifera HOM05D005797 ORTHO05D006479 1.0e-17 96.7 647 21.9
SalBow1G3539 Salvia bowleyana HOM05D005797 ORTHO05D006479 5.2e-17 94.4 157 33.1
Os01g0905400 Oryza sativa ssp. japonica HOM05D005797 ORTHO05D006479 3.4e-16 91.7 631 22.0
TPR.G26145 Trifolium pratense HOM05D005797 ORTHO05D006479 4.9e-15 87.8 662 20.2
PSO063G1422 Papaver somniferum HOM05D005797 ORTHO05D006479 5.4e-14 84.3 123 35.8
Zm00001eb144270 Zea mays HOM05D005797 ORTHO05D006479 1.2e-13 83.2 640 22.7
Haze_07281 Corylus avellana HOM05D005797 ORTHO05D006479 2.0e-13 82.4 125 35.2
Dinv38477 Davidia involucrata HOM05D005797 ORTHO05D006479 5.9e-13 80.9 635 22.2
Prupe.5G157600 Prunus persica HOM05D005797 ORTHO05D006479 7.8e-13 80.5 118 36.4
CSS0028554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 1.0e-12 80.1 149 32.9
CAN.G769.1 Capsicum annuum HOM05D005797 ORTHO05D006479 1.3e-12 79.7 115 39.1
Medtr3g075140 Medicago truncatula HOM05D005797 ORTHO05D006479 1.3e-12 79.7 189 31.2
CAN.G472.30 Capsicum annuum HOM05D005797 ORTHO05D006479 1.7e-12 79.3 239 30.5
MD06G1157600 Malus domestica HOM05D005797 ORTHO05D006479 1.7e-12 79.3 128 35.2
CAN.G352.1 Capsicum annuum HOM05D005797 ORTHO05D006479 2.3e-12 79.0 119 37.8
unitig_699.g19758 Utricularia gibba HOM05D005797 ORTHO05D006479 2.3e-12 79.0 93 43.0
Nn4g22471 Nelumbo nucifera HOM05D005797 ORTHO05D006479 3.9e-12 78.2 143 35.0
Nitab4.5_0002062g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 3.9e-12 78.2 128 35.2
CSS0021207 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 6.6e-12 77.4 132 34.1
Psat5g141720 Pisum sativum HOM05D005797 ORTHO05D006479 6.6e-12 77.4 251 27.1
unitig_61.g26370 Utricularia gibba HOM05D000823 ORTHO05D000088 6.6e-12 77.4 110 37.3
CSS0032554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 8.6e-12 77.0 131 32.8
CiPaw.11G012700 Carya illinoinensis HOM05D005797 ORTHO05D006479 8.6e-12 77.0 126 35.7
CSS0013181 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 1.1e-11 76.6 150 32.0
PGSC0003DMG400034759 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.1e-11 76.6 124 37.9
TWI39G1083 Tripterygium wilfordii HOM05D005797 ORTHO05D006479 1.5e-11 76.3 200 27.0
Aqoxy3G01381 Aquilegia oxysepala HOM05D005797 ORTHO05D006479 2.5e-11 75.5 116 35.3
ClCG03G003480 Citrullus lanatus HOM05D005797 ORTHO05D006479 4.3e-11 74.7 168 29.2
CAN.G1022.3 Capsicum annuum HOM05D005797 ORTHO05D006479 5.6e-11 74.3 120 34.2
Nitab4.5_0010931g0020 Nicotiana tabacum HOM05D005797 ORTHO05D006479 5.6e-11 74.3 111 36.0
Atru.chr9.1003 Acer truncatum HOM05D005797 ORTHO05D006479 7.3e-11 73.9 122 32.8
CDE09G0812 Ceratophyllum demersum HOM05D005797 ORTHO05D006479 7.3e-11 73.9 82 45.1
Potri.012G093200 Populus trichocarpa HOM05D005797 ORTHO05D006479 7.3e-11 73.9 96 37.5
QL10p005358 Quercus lobata HOM05D005797 ORTHO05D006479 9.5e-11 73.6 142 31.7
PGSC0003DMG400044028 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.2e-10 73.2 124 34.7
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.6e-10 72.8 265 25.7
SEGI_41472 Sequoiadendron giganteum HOM05D000823 ORTHO05D006479 1.6e-10 72.8 265 25.7
Actinidia19380 Actinidia chinensis HOM05D005797 ORTHO05D006479 2.1e-10 72.4 96 38.5
Sabra12G0067900 Salix brachista HOM05D005797 ORTHO05D006479 2.1e-10 72.4 138 29.0
MSTRG.9312 Avicennia marina HOM05D005797 ORTHO05D006479 2.8e-10 72.0 121 30.6
PGSC0003DMG400046008 Solanum tuberosum HOM05D005797 ORTHO05D006479 3.6e-10 71.6 125 34.4
Eucgr.K02760 Eucalyptus grandis HOM05D005797 ORTHO05D006479 4.7e-10 71.2 189 30.2
PGSC0003DMG400046794 Solanum tuberosum HOM05D005797 ORTHO05D006479 4.7e-10 71.2 125 33.6
Nitab4.5_0010042g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 6.1e-10 70.9 171 28.7
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 8.0e-10 70.5 102 37.3
CsaV3_1G009280 Cucumis sativus L. HOM05D005797 ORTHO05D006479 1.4e-09 69.7 137 30.7
Peaxi162Scf00089g00723 Petunia axillaris HOM05D005797 ORTHO05D006479 1.4e-09 69.7 145 31.0
Nitab4.5_0003282g0040 Nicotiana tabacum HOM05D005797 ORTHO05D006479 1.8e-09 69.3 204 27.0
RcHm_v2.0_Chr7g0191351 Rosa chinensis HOM05D005797 ORTHO05D006479 1.8e-09 69.3 110 32.7
Solyc10g053890.2 Solanum lycopersicum HOM05D005797 ORTHO05D006479 1.8e-09 69.3 118 35.6
VMungo1309G1346 Vigna mungo HOM05D005797 ORTHO05D006479 1.8e-09 69.3 127 31.5
QL05p054837 Quercus lobata HOM05D005797 ORTHO05D006479 2.3e-09 68.9 117 34.2
Sopen03g003130 Solanum pennellii HOM05D005797 ORTHO05D006479 2.3e-09 68.9 97 36.1
PGSC0003DMG401015175 Solanum tuberosum HOM05D005797 ORTHO05D006479 2.3e-09 68.9 132 31.1
Oeu036024.1 Olea europaea HOM05D005797 ORTHO05D006479 3.1e-09 68.6 113 37.2
Solyc03g007140.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 3.1e-09 68.6 87 39.1
CAN.G1022.5 Capsicum annuum HOM05D005797 ORTHO05D006479 4.0e-09 68.2 130 30.8
Cc04_g10490 Coffea canephora HOM05D005797 ORTHO05D006479 4.0e-09 68.2 160 31.9
Lalb_Chr23g0273471 Lupinus albus HOM05D005797 ORTHO05D006479 4.0e-09 68.2 609 21.2
Peaxi162Scf00536g00111 Petunia axillaris HOM05D005797 ORTHO05D006479 4.0e-09 68.2 272 24.3
Sc10g0010330 Simmondsia chinensis HOM05D005797 ORTHO05D006479 5.2e-09 67.8 116 31.9
PGSC0003DMG400031024 Solanum tuberosum HOM05D005797 ORTHO05D006479 5.2e-09 67.8 106 34.9
EL10Ac7g18068 Beta vulgaris HOM05D005797 ORTHO05D006479 6.8e-09 67.4 130 31.5
FAN04G0892 Fragaria x ananassa HOM05D005797 ORTHO05D006479 8.9e-09 67.0 107 33.6
HanXRQChr16g0497931 Helianthus annuus HOM05D005797 ORTHO05D006479 8.9e-09 67.0 130 33.8
Sopen03g030640 Solanum pennellii HOM05D005797 ORTHO05D006479 8.9e-09 67.0 126 31.0
arahy.Tifrunner.gnm1.ann1.7Y7E6F Arachis hypogaea HOM05D005797 ORTHO05D006479 1.2e-08 66.6 622 20.1
FAN13G0931 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.2e-08 66.6 107 33.6
PGR044G0013 Punica granatum HOM05D005797 ORTHO05D006479 1.2e-08 66.6 619 20.7
HPP92_027093 Vanilla planifolia HOM05D022286 ORTHO05D006479 1.2e-08 66.6 165 29.7
EL10Ac7g18067 Beta vulgaris HOM05D005797 ORTHO05D006479 1.5e-08 66.2 140 30.7
CANSAT80G2591 Cannabis sativa HOM05D005797 ORTHO05D006479 1.5e-08 66.2 89 36.0
FAN08G2881 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.5e-08 66.2 107 32.7
Nn5g29401 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.5e-08 66.2 140 29.3
Sed0007512 Sechium edule HOM05D005797 ORTHO05D006479 2.0e-08 65.9 84 36.9
Hund18537 Selenicereus undatus HOM05D005797 ORTHO05D006479 2.6e-08 65.5 89 37.1
Solyc03g111500.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 2.6e-08 65.5 83 39.8
PGSC0003DMG400037834 Solanum tuberosum HOM05D005797 ORTHO05D006479 2.6e-08 65.5 232 26.3
arahy.Tifrunner.gnm1.ann1.NX8KLK Arachis hypogaea HOM05D005797 ORTHO05D006479 3.4e-08 65.1 129 27.9
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 3.4e-08 65.1 131 28.2
Rhsim01G0114700 Rhododendron simsii HOM05D005797 ORTHO05D006479 3.4e-08 65.1 124 33.1
PGSC0003DMG400031023 Solanum tuberosum HOM05D005797 ORTHO05D006479 3.4e-08 65.1 99 35.4
Sed0000312 Sechium edule HOM05D007907 ORTHO05D009079 4.4e-08 64.7 102 34.3
SEGI_23984 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.4e-08 64.7 171 26.3
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 4.4e-08 64.7 104 29.8
Lj5A100T65 Lonicera japonica HOM05D005797 ORTHO05D006479 5.8e-08 64.3 109 34.9
Lsat_1_v5_gn_4_78921 Lactuca sativa HOM05D005797 ORTHO05D006479 7.5e-08 63.9 125 32.0
arahy.Tifrunner.gnm1.ann1.8D6Z2X Arachis hypogaea HOM05D000823 ORTHO05D000088 9.8e-08 63.5 107 35.5
arahy.Tifrunner.gnm1.ann1.NFB9X0 Arachis hypogaea HOM05D000823 ORTHO05D000088 9.8e-08 63.5 107 35.5
Glyma.04G192400 Glycine max HOM05D005797 ORTHO05D006479 9.8e-08 63.5 128 29.7
GSVIVG01007552001 Vitis vinifera HOM05D005797 ORTHO05D006479 9.8e-08 63.5 183 24.0
Ciclev10019558m.g Citrus clementina HOM05D005797 ORTHO05D006479 1.3e-07 63.2 95 32.6
FvH4_5g07280 Fragaria vesca HOM05D005797 ORTHO05D006479 1.7e-07 62.8 107 31.8
FAN18G3318 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.7e-07 62.8 107 31.8
ECA232G3585 Erigeron canadensis HOM05D005797 ORTHO05D006479 2.2e-07 62.4 97 34.0
Migut.O00498 Erythranthe guttata HOM05D005797 ORTHO05D006479 2.9e-07 62.0 121 27.3
unitig_46.g18625 Utricularia gibba HOM05D000823 ORTHO05D000088 2.9e-07 62.0 81 37.0
HPP92_021430 Vanilla planifolia HOM05D000573 ORTHO05D000425 2.9e-07 62.0 113 33.6
ATR0796G296 Amborella trichopoda HOM05D000823 ORTHO05D000088 6.4e-07 60.8 99 33.3
Nn3g16591 Nelumbo nucifera HOM05D005797 ORTHO05D006479 6.4e-07 60.8 97 32.0
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.3e-07 60.5 144 29.9
SEGI_37905 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.3e-07 60.5 95 32.6
SGA_v2.0_scaffold172G39027 Striga asiatica HOM05D005797 ORTHO05D006479 8.3e-07 60.5 175 26.3
vmacro21190 Vaccinium macrocarpon HOM05D005797 ORTHO05D006479 8.3e-07 60.5 116 31.0
AUR62001271 Chenopodium quinoa HOM05D005797 ORTHO05D006479 1.1e-06 60.1 97 34.0
AUR62025735 Chenopodium quinoa HOM05D005797 ORTHO05D006479 1.1e-06 60.1 97 34.0
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 1.1e-06 60.1 95 31.6
SalBow1G4579 Salvia bowleyana HOM05D005797 ORTHO05D000088 1.1e-06 60.1 110 35.5
PGSC0003DMG400035342 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.1e-06 60.1 85 35.3
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.1e-06 60.1 174 23.6
Oeu011579.3 Olea europaea HOM05D005797 ORTHO05D006479 1.4e-06 59.7 72 41.7
ATR1132G056 Amborella trichopoda HOM05D000823 ORTHO05D000088 1.9e-06 59.3 178 25.3
Phvul.009G169300 Phaseolus vulgaris HOM05D005797 ORTHO05D006479 1.9e-06 59.3 84 34.5
Hund05629 Selenicereus undatus HOM05D005797 ORTHO05D006479 1.9e-06 59.3 85 36.5
TPR.G15761 Trifolium pratense HOM05D000823 ORTHO05D000088 1.9e-06 59.3 98 32.7
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 2.4e-06 58.9 105 27.6
Lj5g0027331 Lotus japonicus HOM05D000823 ORTHO05D000088 2.4e-06 58.9 139 28.8
RcHm_v2.0_Chr2g0149281 Rosa chinensis HOM05D005797 ORTHO05D006479 2.4e-06 58.9 163 28.2
SEGI_02416 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.4e-06 58.9 181 28.2
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.4e-06 58.9 105 29.5
ATR0626G172 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.2e-06 58.5 132 31.1
Lj7C16G12 Lonicera japonica HOM05D000395 ORTHO05D000088 3.2e-06 58.5 89 37.1
Nn6g32134 Nelumbo nucifera HOM05D000823 ORTHO05D000088 3.2e-06 58.5 99 31.3
Sabra02G0101800 Salix brachista HOM05D000823 ORTHO05D000088 3.2e-06 58.5 98 32.7
SEGI_21306 Sequoiadendron giganteum HOM05D000004 ORTHO05D006479 3.2e-06 58.5 143 28.7
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 4.1e-06 58.2 101 28.7
AUR62016449 Chenopodium quinoa HOM05D000395 ORTHO05D000088 4.1e-06 58.2 94 34.0
PSO478G0449 Papaver somniferum HOM05D005797 ORTHO05D006479 4.1e-06 58.2 93 33.3
Hund05636 Selenicereus undatus HOM05D005797 ORTHO05D006479 4.1e-06 58.2 85 36.5
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.1e-06 58.2 107 31.8
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 4.1e-06 58.2 73 32.9
Lj5g0024307 Lotus japonicus HOM05D000823 ORTHO05D000088 5.4e-06 57.8 96 33.3
Nn8g39858 Nelumbo nucifera HOM05D000823 ORTHO05D000088 5.4e-06 57.8 127 26.8
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 7.0e-06 57.4 121 33.1
Manes.05G168900 Manihot esculenta HOM05D000823 ORTHO05D000088 7.0e-06 57.4 111 33.3
Phvul.006G100700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 7.0e-06 57.4 104 30.8
Psat6g011600 Pisum sativum HOM05D000823 ORTHO05D000088 7.0e-06 57.4 124 29.8
VMungo0540G0559 Vigna mungo HOM05D000823 ORTHO05D000088 7.0e-06 57.4 101 31.7
CDE04G1885 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 9.2e-06 57.0 98 31.6
Gohir.D02G093100 Gossypium hirsutum HOM05D000823 ORTHO05D000088 9.2e-06 57.0 92 34.8
Gorai.005G105400 Gossypium raimondii HOM05D000823 ORTHO05D000088 9.2e-06 57.0 92 34.8
Lj7C19G3 Lonicera japonica HOM05D000395 ORTHO05D000088 9.2e-06 57.0 89 37.1
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 9.2e-06 57.0 95 31.6


User provided reference genes

Program Settings