Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb246100 Zea mays HOM05D004486 ORTHO05D006329 2.3e-93 345.5 166 100.0
Zm00001eb258690 Zea mays HOM05D004486 ORTHO05D006329 2.5e-92 342.0 166 98.8
Zm00001eb160290 Zea mays HOM05D004486 ORTHO05D006329 3.3e-92 341.7 165 99.4
Zm00001eb062480 Zea mays HOM05D004486 ORTHO05D006329 2.0e-81 305.8 149 98.0
Os03g0819100 Oryza sativa ssp. japonica HOM05D004486 ORTHO05D006329 1.1e-76 290.0 149 91.3
Eucgr.J01127 Eucalyptus grandis HOM05D004486 ORTHO05D006329 3.9e-69 265.0 149 83.9
Lj5g0008233 Lotus japonicus HOM05D004486 ORTHO05D006329 8.6e-69 263.8 149 82.6
Hund19290 Selenicereus undatus HOM05D004486 ORTHO05D006329 3.3e-68 261.9 149 83.2
HPP92_015409 Vanilla planifolia HOM05D004486 ORTHO05D006329 4.3e-68 261.5 149 82.6
HPP92_026987 Vanilla planifolia HOM05D004486 ORTHO05D006329 4.3e-68 261.5 149 82.6
PGR044G2316 Punica granatum HOM05D004486 ORTHO05D006329 1.6e-67 259.6 149 81.9
FAN06G4941 Fragaria x ananassa HOM05D004486 ORTHO05D006329 3.6e-67 258.5 149 80.5
TAR369G0956 Trochodendron aralioides HOM05D004486 ORTHO05D006329 3.6e-67 258.5 149 80.5
Zm00001eb103910 Zea mays HOM05D004486 ORTHO05D006329 3.6e-67 258.5 123 99.2
FvH4_7g20511 Fragaria vesca HOM05D004486 ORTHO05D006329 4.7e-67 258.1 149 80.5
Glyma.20G244100 Glycine max HOM05D004486 ORTHO05D006329 4.7e-67 258.1 149 79.9
MBI05_g24466_MAGBIO Magnolia biondii HOM05D004486 ORTHO05D006329 4.7e-67 258.1 149 81.2
CANSAT11G2341 Cannabis sativa HOM05D004486 ORTHO05D006329 6.2e-67 257.7 149 79.9
Haze_16953 Corylus avellana HOM05D004486 ORTHO05D006329 8.1e-67 257.3 149 80.5
Phvul.007G005900 Phaseolus vulgaris HOM05D004486 ORTHO05D006329 8.1e-67 257.3 149 79.9
CSS0008191 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 1.4e-66 256.5 149 81.2
DCAR_006479 Daucus carota HOM05D004486 ORTHO05D006329 1.4e-66 256.5 149 81.9
Prupe.2G220700 Prunus persica HOM05D004486 ORTHO05D006329 1.4e-66 256.5 149 79.2
Ciclev10030974m.g Citrus clementina HOM05D004486 ORTHO05D006329 1.8e-66 256.1 149 80.5
Oeu016149.1 Olea europaea HOM05D004486 ORTHO05D006329 1.8e-66 256.1 148 79.7
Atru.chr12.611 Acer truncatum HOM05D004486 ORTHO05D006329 3.1e-66 255.4 149 81.2
CAN.G742.18 Capsicum annuum HOM05D004486 ORTHO05D006329 3.1e-66 255.4 149 80.5
QL08p057259 Quercus lobata HOM05D004486 ORTHO05D006329 3.1e-66 255.4 149 80.5
RcHm_v2.0_Chr1g0364401 Rosa chinensis HOM05D004486 ORTHO05D006329 3.1e-66 255.4 149 80.5
CSS0049406 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 4.0e-66 255.0 149 80.5
Lalb_Chr21g0307511 Lupinus albus HOM05D004486 ORTHO05D006329 4.0e-66 255.0 149 79.2
MD07G1182000 Malus domestica HOM05D004486 ORTHO05D006329 4.0e-66 255.0 149 79.2
Peaxi162Scf01024g00121 Petunia axillaris HOM05D004486 ORTHO05D006329 4.0e-66 255.0 149 80.5
AUR62027896 Chenopodium quinoa HOM05D004486 ORTHO05D006329 5.2e-66 254.6 149 79.2
AUR62036016 Chenopodium quinoa HOM05D004486 ORTHO05D006329 5.2e-66 254.6 149 79.2
Medtr1g116230 Medicago truncatula HOM05D004486 ORTHO05D006329 5.2e-66 254.6 149 81.2
Nitab4.5_0000561g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 5.2e-66 254.6 149 80.5
Sabra08G0032200 Salix brachista HOM05D004486 ORTHO05D006329 6.8e-66 254.2 149 79.9
VMungo0720G3071 Vigna mungo HOM05D004486 ORTHO05D006329 6.8e-66 254.2 149 79.9
CiPaw.01G277900 Carya illinoinensis HOM05D004486 ORTHO05D006329 8.9e-66 253.8 149 79.2
Cc09_g02360 Coffea canephora HOM05D004486 ORTHO05D006329 8.9e-66 253.8 149 78.5
FAN01G2088 Fragaria x ananassa HOM05D004486 ORTHO05D006329 8.9e-66 253.8 149 77.9
Nn2g12957 Nelumbo nucifera HOM05D004486 ORTHO05D006329 8.9e-66 253.8 149 80.5
SGA_v2.0_scaffold71G24033 Striga asiatica HOM05D004486 ORTHO05D006329 8.9e-66 253.8 149 79.2
Cfa001575 Carpinus fangiana HOM05D004486 ORTHO05D006329 1.2e-65 253.4 149 79.9
Manes.18G141033 Manihot esculenta HOM05D004486 ORTHO05D006329 1.2e-65 253.4 149 80.5
SalBow3G3918 Salvia bowleyana HOM05D004486 ORTHO05D006329 1.2e-65 253.4 149 79.2
TWI38G2347 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 1.2e-65 253.4 149 79.9
EL10Ac2g03540 Beta vulgaris HOM05D004486 ORTHO05D006329 1.5e-65 253.1 149 79.2
Dinv11819 Davidia involucrata HOM05D004486 ORTHO05D006329 1.5e-65 253.1 149 80.5
TPR.G10423 Trifolium pratense HOM05D004486 ORTHO05D006329 1.5e-65 253.1 149 80.5
Gohir.A13G021200 Gossypium hirsutum HOM05D004486 ORTHO05D006329 2.0e-65 252.7 149 79.9
Psat6g239960 Pisum sativum HOM05D004486 ORTHO05D006329 2.0e-65 252.7 149 79.9
GSVIVG01032649001 Vitis vinifera HOM05D004486 ORTHO05D006329 2.0e-65 252.7 149 78.5
Actinidia03014 Actinidia chinensis HOM05D004486 ORTHO05D006329 3.4e-65 251.9 149 80.5
FAN06G4255 Fragaria x ananassa HOM05D004486 ORTHO05D006329 3.4e-65 251.9 149 79.2
MSTRG.8160 Avicennia marina HOM05D004486 ORTHO05D006329 4.4e-65 251.5 149 79.2
VMungo0720G1168 Vigna mungo HOM05D004486 ORTHO05D006329 4.4e-65 251.5 149 79.9
Hma1.2p1_2685F.1_g326910 Hydrangea macrophylla HOM05D004486 ORTHO05D006329 5.8e-65 251.1 149 78.5
Nitab4.5_0000830g0030 Nicotiana tabacum HOM05D004486 ORTHO05D006329 5.8e-65 251.1 149 79.9
Cpa.g.sc1.280 Carica papaya HOM05D004486 ORTHO05D006329 1.3e-64 250.0 148 80.4
Manes.18G141037 Manihot esculenta HOM05D004486 ORTHO05D006329 1.3e-64 250.0 149 79.2
Potri.008G045900 Populus trichocarpa HOM05D004486 ORTHO05D006329 1.3e-64 250.0 149 79.2
Ca_11379_v3 Cicer arietinum L. HOM05D004486 ORTHO05D006329 1.7e-64 249.6 149 77.9
Eucgr.J01128 Eucalyptus grandis HOM05D004486 ORTHO05D006329 1.7e-64 249.6 151 78.1
Gohir.D13G021700 Gossypium hirsutum HOM05D004486 ORTHO05D006329 1.7e-64 249.6 149 79.2
Gorai.013G024500 Gossypium raimondii HOM05D004486 ORTHO05D006329 1.7e-64 249.6 149 79.2
PSO339G6713 Papaver somniferum HOM05D004486 ORTHO05D006329 1.7e-64 249.6 149 75.8
Peaxi162Scf01024g00123 Petunia axillaris HOM05D004486 ORTHO05D006329 2.9e-64 248.8 149 78.5
FAN10G3892 Fragaria x ananassa HOM05D004486 ORTHO05D006329 3.7e-64 248.4 162 73.5
vmacro07094 Vaccinium macrocarpon HOM05D004486 ORTHO05D006329 3.7e-64 248.4 149 78.5
Migut.F01788 Erythranthe guttata HOM05D004486 ORTHO05D006329 4.9e-64 248.1 149 78.5
MD01G1114100 Malus domestica HOM05D004486 ORTHO05D006329 6.4e-64 247.7 149 76.5
Nitab4.5_0000830g0050 Nicotiana tabacum HOM05D004486 ORTHO05D006329 6.4e-64 247.7 149 79.9
Rhsim12G0129400 Rhododendron simsii HOM05D004486 ORTHO05D006329 6.4e-64 247.7 149 78.5
Lj8A94T45 Lonicera japonica HOM05D004486 ORTHO05D006329 8.3e-64 247.3 149 78.5
MSTRG.361 Avicennia marina HOM05D004486 ORTHO05D006329 1.1e-63 246.9 149 77.9
Duzib106G0308 Durio zibethinus HOM05D004486 ORTHO05D006329 1.1e-63 246.9 149 77.9
MD01G1113900 Malus domestica HOM05D004486 ORTHO05D006329 1.4e-63 246.5 149 75.8
Ah.10g033110 Amaranthus hybridus HOM05D004486 ORTHO05D006329 1.9e-63 246.1 149 78.5
Manes.18G142200 Manihot esculenta HOM05D004486 ORTHO05D006329 3.2e-63 245.4 149 78.5
PSO384G2310 Papaver somniferum HOM05D004486 ORTHO05D006329 3.2e-63 245.4 149 75.2
Potri.010G215700 Populus trichocarpa HOM05D004486 ORTHO05D006329 3.2e-63 245.4 149 79.2
PGSC0003DMG400028998 Solanum tuberosum HOM05D004486 ORTHO05D006329 4.1e-63 245.0 149 78.5
arahy.Tifrunner.gnm1.ann1.GKFC1I Arachis hypogaea HOM05D004486 ORTHO05D006329 5.4e-63 244.6 149 77.2
arahy.Tifrunner.gnm1.ann1.Q6727A Arachis hypogaea HOM05D004486 ORTHO05D006329 5.4e-63 244.6 149 77.2
Aqoxy4G03158 Aquilegia oxysepala HOM05D004486 ORTHO05D006329 7.1e-63 244.2 149 77.2
CDE04G1784 Ceratophyllum demersum HOM05D004486 ORTHO05D006329 9.2e-63 243.8 149 76.5
ECA233G4916 Erigeron canadensis HOM05D004486 ORTHO05D006329 1.2e-62 243.4 149 77.9
BcaC04g19110 Brassica carinata HOM05D004486 ORTHO05D006329 1.6e-62 243.0 149 77.2
C09p63580 Brassica napus HOM05D004486 ORTHO05D006329 1.6e-62 243.0 149 77.2
BolC9t59201H Brassica oleracea HOM05D004486 ORTHO05D006329 1.6e-62 243.0 149 77.2
HanXRQChr12g0367761 Helianthus annuus HOM05D004486 ORTHO05D006329 1.6e-62 243.0 149 77.9
Sed0016157 Sechium edule HOM05D004486 ORTHO05D006329 1.6e-62 243.0 149 75.8
ECA233G5280 Erigeron canadensis HOM05D004486 ORTHO05D006329 2.1e-62 242.7 146 78.8
Solyc04g049720.4 Solanum lycopersicum HOM05D004486 ORTHO05D006329 2.1e-62 242.7 149 77.9
A10p24750 Brassica napus HOM05D004486 ORTHO05D006329 4.6e-62 241.5 149 76.5
Thhalv10012982m.g Eutrema salsugineum HOM05D004486 ORTHO05D006329 4.6e-62 241.5 149 75.8
TWI38G1612 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 6.0e-62 241.1 149 75.2
Lsat_1_v5_gn_8_21161 Lactuca sativa HOM05D004486 ORTHO05D006329 7.8e-62 240.7 149 77.2
Sopen04g019990 Solanum pennellii HOM05D004486 ORTHO05D006329 7.8e-62 240.7 149 77.9
Thecc.10G065100 Theobroma cacao HOM05D004486 ORTHO05D006329 7.8e-62 240.7 149 75.8
BraA10t44538Z Brassica rapa HOM05D004486 ORTHO05D006329 1.0e-61 240.4 149 76.5
THA.LOC104827314 Tarenaya hassleriana HOM05D004486 ORTHO05D006329 1.0e-61 240.4 149 77.9
Sp6g30500 Schrenkiella parvula HOM05D004486 ORTHO05D006329 1.3e-61 240.0 149 75.8
Sabra10G0166800 Salix brachista HOM05D004486 ORTHO05D006329 2.3e-61 239.2 149 75.8
Lj7A436T61 Lonicera japonica HOM05D004486 ORTHO05D006329 3.9e-61 238.4 149 76.5
BcaNung01890 Brassica carinata HOM05D004486 ORTHO05D006329 6.6e-61 237.7 149 75.8
Aa31sc127G20 Aethionema arabicum HOM05D004486 ORTHO05D006329 1.9e-60 236.1 149 75.8
Carub.0006s1168 Capsella rubella HOM05D004486 ORTHO05D006329 3.3e-60 235.3 149 75.8
SEGI_01278 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 3.3e-60 235.3 149 71.8
A02p02010 Brassica napus HOM05D004486 ORTHO05D006329 4.3e-60 235.0 149 75.2
BcaNung01146 Brassica carinata HOM05D004486 ORTHO05D006329 7.3e-60 234.2 149 74.5
BraA02t05173Z Brassica rapa HOM05D004486 ORTHO05D006329 7.3e-60 234.2 149 74.5
BolC2t06563H Brassica oleracea HOM05D004486 ORTHO05D006329 1.2e-59 233.4 146 75.3
AL6G24140 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.6e-59 233.0 149 75.2
AT5G13520 Arabidopsis thaliana HOM05D004486 ORTHO05D006329 2.8e-59 232.3 149 75.2
C02p06220 Brassica napus HOM05D004486 ORTHO05D006329 3.6e-59 231.9 149 73.8
CSS0021534 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 3.6e-59 231.9 149 74.5
CsaV3_5G026050 Cucumis sativus L. HOM05D004486 ORTHO05D006329 1.4e-58 229.9 149 68.5
unitig_60.g25720 Utricularia gibba HOM05D004486 ORTHO05D006329 1.4e-58 229.9 149 73.8
MELO3C025494.2 Cucumis melo HOM05D004486 ORTHO05D006329 2.4e-58 229.2 149 69.1
AL6G23300 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.2e-57 226.9 149 73.8
AL6G23330 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.2e-57 226.9 149 73.8
SEGI_27690 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 1.4e-55 219.9 147 68.7
CARHR199920 Cardamine hirsuta HOM05D004486 ORTHO05D006329 7.1e-55 217.6 149 70.5
Mapoly0007s0135 Marchantia polymorpha HOM05D004486 ORTHO05D006329 6.9e-50 201.1 149 61.1
AagrBONN_evm.TU.Sc2ySwM_362.2493 Anthoceros agrestis HOM05D004486 ORTHO05D006329 2.0e-49 199.5 149 62.4
Nitab4.5_0005262g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.7e-48 196.4 125 75.2
SMO356G0749 Selaginella moellendorffii HOM05D004486 ORTHO05D006329 5.1e-45 184.9 149 56.4
CBR_g45218 Chara braunii HOM05D004486 ORTHO05D006329 3.8e-40 168.7 138 58.0
Duzib128G1554 Durio zibethinus HOM05D004486 ORTHO05D006329 2.0e-33 146.4 82 80.5
unitig_0.g185 Utricularia gibba HOM05D004486 ORTHO05D006329 2.3e-29 132.9 155 47.1
ClCG09G020360 Citrullus lanatus HOM05D004486 ORTHO05D006329 2.5e-28 129.4 149 44.3
Actinidia38236 Actinidia chinensis HOM05D004486 ORTHO05D006329 5.7e-28 128.3 79 75.9
Cfa024826 Carpinus fangiana HOM05D004486 ORTHO05D006329 3.0e-21 105.9 142 38.0
Cre13.g585900 Chlamydomonas reinhardtii HOM05D004486 ORTHO05D006329 6.9e-18 94.7 142 38.7
PRCOL_00006050 Prasinoderma coloniale HOM05D004486 ORTHO05D006329 9.4e-15 84.3 139 32.4
MCO01G623 Micromonas commoda HOM05D004486 ORTHO05D006329 1.6e-14 83.6 151 31.8
Haze_22492 Corylus avellana HOM05D000583 ORTHO05D000442 6.1e-14 81.6 50 74.0
Nitab4.5_0001155g0060 Nicotiana tabacum HOM05D011506 ORTHO05D014242 1.8e-13 80.1 46 84.8
Nn8g39313 Nelumbo nucifera HOM05D004486 ORTHO05D006329 3.2e-07 59.3 34 73.5


User provided reference genes

Program Settings