Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 2.5e-44 181.8 97 100.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 6.2e-43 177.2 97 95.9
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 3.4e-41 171.4 97 93.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 7.4e-28 127.1 97 70.1
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 2.3e-21 105.5 100 64.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 4.3e-20 101.3 100 64.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 9.6e-20 100.1 99 59.6
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 6.9e-18 94.0 100 58.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 2.0e-17 92.4 100 59.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 7.6e-17 90.5 100 57.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 7.6e-17 90.5 100 59.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.3e-16 89.7 100 60.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 2.2e-16 89.0 100 57.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 4.9e-16 87.8 99 53.5
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.4e-15 86.3 100 56.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 7.1e-15 84.0 100 54.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.1e-14 82.4 99 53.5
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.3e-13 79.7 100 55.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.8e-13 79.3 100 50.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 2.3e-13 79.0 100 53.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.3e-13 79.0 100 51.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.3e-13 79.0 100 52.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 3.0e-13 78.6 99 47.5
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.0e-13 78.6 100 50.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 5.1e-13 77.8 100 55.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 6.7e-13 77.4 100 49.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 6.7e-13 77.4 100 53.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 8.7e-13 77.0 100 54.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 1.9e-12 75.9 98 49.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 1.9e-12 75.9 100 49.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 9.7e-12 73.6 101 49.5
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-11 73.2 100 52.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-11 73.2 100 52.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 2.2e-11 72.4 102 48.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 2.8e-11 72.0 100 50.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 2.8e-11 72.0 100 48.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 3.7e-11 71.6 100 50.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 4.8e-11 71.2 100 51.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 4.8e-11 71.2 102 48.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 4.8e-11 71.2 100 50.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 1.4e-10 69.7 102 47.1
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 1.4e-10 69.7 100 47.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.4e-10 68.9 100 50.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.4e-10 68.9 100 50.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 3.1e-10 68.6 99 48.5
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 50.5
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 50.5
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 50.5
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 4.1e-10 68.2 100 47.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 4.1e-10 68.2 98 49.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 5.3e-10 67.8 101 51.5
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 5.3e-10 67.8 74 56.8
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 5.3e-10 67.8 98 49.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 5.3e-10 67.8 100 49.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 6.9e-10 67.4 100 47.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 6.9e-10 67.4 91 46.2
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 9.0e-10 67.0 100 48.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 9.0e-10 67.0 100 48.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 9.0e-10 67.0 100 50.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.2e-09 66.6 99 51.5
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.2e-09 66.6 99 51.5
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.2e-09 66.6 76 52.6
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.5e-09 66.2 100 48.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.5e-09 66.2 100 48.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.0e-09 65.9 68 58.8
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.0e-09 65.9 99 50.5
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.6e-09 65.5 99 49.5
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.6e-09 65.5 99 49.5
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 3.4e-09 65.1 100 48.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 3.4e-09 65.1 99 50.5
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 3.4e-09 65.1 101 51.5
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 3.4e-09 65.1 72 56.9
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 4.5e-09 64.7 96 43.8
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 7.6e-09 63.9 100 47.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 7.6e-09 63.9 100 46.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.3e-08 63.2 100 48.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.7e-08 62.8 100 47.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 2.2e-08 62.4 100 45.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 2.9e-08 62.0 102 44.1
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 2.9e-08 62.0 102 44.1
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 2.9e-08 62.0 102 44.1
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 2.9e-08 62.0 98 45.9
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 3.8e-08 61.6 100 47.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 3.8e-08 61.6 100 47.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 3.8e-08 61.6 100 47.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 5.0e-08 61.2 100 48.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 6.5e-08 60.8 100 47.0
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 6.5e-08 60.8 61 59.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.4e-07 59.7 100 44.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.9e-07 59.3 100 44.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 5.5e-07 57.8 98 45.9
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 7.2e-07 57.4 100 46.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 9.3e-07 57.0 131 38.2
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 9.3e-07 57.0 61 55.7
CBR_g45542 Chara braunii HOM05D006995 ORTHO05D008870 4.6e-06 54.7 67 49.3


User provided reference genes

Program Settings