Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb245870 Zea mays HOM05D000090 ORTHO05D000083 4.4e-77 291.2 144 100.0
Zm00001eb245850 Zea mays HOM05D000090 ORTHO05D000083 1.1e-51 206.8 201 58.7
Zm00001eb108580 Zea mays HOM05D000090 ORTHO05D000083 1.8e-46 189.5 204 53.9
Zm00001eb071200 Zea mays HOM05D000090 ORTHO05D000083 2.6e-45 185.7 204 54.9
Os06g0590700 Oryza sativa ssp. japonica HOM05D000090 ORTHO05D000083 1.4e-35 153.3 201 42.8
Os06g0187500 Oryza sativa ssp. japonica HOM05D000090 ORTHO05D000083 1.0e-33 147.1 211 42.7
Os06g0590800 Oryza sativa ssp. japonica HOM05D000090 ORTHO05D000083 3.0e-33 145.6 206 41.3
Zm00001eb386120 Zea mays HOM05D000090 ORTHO05D000083 4.3e-32 141.7 209 43.1
Zm00001eb386070 Zea mays HOM05D000090 ORTHO05D000083 1.9e-16 89.7 63 77.8
MBI14_g08069_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D000083 9.0e-14 80.9 214 27.6
MBI14_g08067_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D000083 1.5e-13 80.1 215 27.4
Sabra06G0211000 Salix brachista HOM05D000090 ORTHO05D000083 1.7e-12 76.6 209 28.7
Eucgr.A01139 Eucalyptus grandis HOM05D000090 ORTHO05D000083 8.4e-12 74.3 217 26.7
Potri.006G272600 Populus trichocarpa HOM05D000090 ORTHO05D000083 1.4e-11 73.6 210 27.1
Eucgr.J03158 Eucalyptus grandis HOM05D000090 ORTHO05D000083 9.3e-11 70.9 180 27.2
Eucgr.J03155 Eucalyptus grandis HOM05D000090 ORTHO05D000083 1.2e-10 70.5 207 27.5
Manes.16G134100 Manihot esculenta HOM05D000090 ORTHO05D000083 2.1e-10 69.7 209 28.2
Nn003s41398 Nelumbo nucifera HOM05D000090 ORTHO05D000083 2.1e-10 69.7 214 27.1
Nn8g40265 Nelumbo nucifera HOM05D000090 ORTHO05D000083 2.1e-10 69.7 214 27.1
Eucgr.J03156 Eucalyptus grandis HOM05D000090 ORTHO05D000083 2.7e-10 69.3 180 27.8
Potri.006G272500 Populus trichocarpa HOM05D000090 ORTHO05D000083 2.7e-10 69.3 210 26.2
QL12p025531 Quercus lobata HOM05D000090 ORTHO05D000083 4.6e-10 68.6 202 27.7
FAN20G0877 Fragaria x ananassa HOM05D000090 ORTHO05D000083 6.0e-10 68.2 209 26.3
Eucgr.J03157 Eucalyptus grandis HOM05D000090 ORTHO05D000083 7.9e-10 67.8 148 33.1
FAN27G1639 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.0e-09 67.4 209 26.3
RcHm_v2.0_Chr6g0305151 Rosa chinensis HOM05D000090 ORTHO05D000083 1.3e-09 67.0 215 27.9
FvH4_2g36640 Fragaria vesca HOM05D000090 ORTHO05D000083 3.0e-09 65.9 209 25.4
Sabra18G0013100 Salix brachista HOM05D000090 ORTHO05D000083 3.0e-09 65.9 206 26.7
Sabra18G0015800 Salix brachista HOM05D000090 ORTHO05D000083 3.9e-09 65.5 206 26.7
TAR383G0257 Trochodendron aralioides HOM05D000090 ORTHO05D000083 3.9e-09 65.5 204 26.5
Prupe.1G458400 Prunus persica HOM05D000090 ORTHO05D000083 5.1e-09 65.1 209 26.3
Prupe.1G458200 Prunus persica HOM05D000090 ORTHO05D000083 1.1e-08 63.9 209 25.8
MD15G1106200 Malus domestica HOM05D000090 ORTHO05D000083 1.5e-08 63.5 208 26.4
Potri.018G009000 Populus trichocarpa HOM05D000090 ORTHO05D000083 1.9e-08 63.2 211 26.1
Aqoxy7G03218 Aquilegia oxysepala HOM05D000090 ORTHO05D000083 3.3e-08 62.4 205 25.9
TAR626G0146 Trochodendron aralioides HOM05D000090 ORTHO05D000083 5.6e-08 61.6 204 26.0
CiPaw.16G010500 Carya illinoinensis HOM05D000090 ORTHO05D000083 7.4e-08 61.2 207 25.1
Potri.018G008900 Populus trichocarpa HOM05D000090 ORTHO05D000083 7.4e-08 61.2 208 25.5
QL05p083149 Quercus lobata HOM05D000090 ORTHO05D000083 7.4e-08 61.2 204 24.5
Nitab4.5_0000852g0130 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.6e-07 60.1 149 28.9
Atru.chr7.522 Acer truncatum HOM05D000090 ORTHO05D000083 2.1e-07 59.7 82 32.9
CSS0045792 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 2.1e-07 59.7 204 26.0
CiPaw.16G010400 Carya illinoinensis HOM05D000090 ORTHO05D000083 2.1e-07 59.7 198 27.3
Rhsim11G0047800 Rhododendron simsii HOM05D000090 ORTHO05D000083 2.8e-07 59.3 208 25.0
EL10Ac7g18222 Beta vulgaris HOM05D000090 ORTHO05D000083 3.7e-07 58.9 84 36.9
Aqoxy7G02486 Aquilegia oxysepala HOM05D000090 ORTHO05D000083 4.8e-07 58.5 210 24.3
Lj9C177T2 Lonicera japonica HOM05D000090 ORTHO05D000083 4.8e-07 58.5 203 27.1
Rhsim11G0048000 Rhododendron simsii HOM05D000090 ORTHO05D000083 6.2e-07 58.2 209 25.4
CiPaw.05G008700 Carya illinoinensis HOM05D000090 ORTHO05D000083 1.1e-06 57.4 163 27.0
Eucgr.J03154 Eucalyptus grandis HOM05D000090 ORTHO05D000083 1.1e-06 57.4 180 23.9
Rhsim08G0056100 Rhododendron simsii HOM05D000090 ORTHO05D000083 1.1e-06 57.4 198 23.7
Haze_01176 Corylus avellana HOM05D000090 ORTHO05D000083 1.4e-06 57.0 176 23.3
PSO423G0159 Papaver somniferum HOM05D000090 ORTHO05D000083 1.4e-06 57.0 208 26.9
Rhsim08G0248200 Rhododendron simsii HOM05D000090 ORTHO05D000083 1.4e-06 57.0 83 34.9
Nn3g16910 Nelumbo nucifera HOM05D000090 ORTHO05D000083 2.4e-06 56.2 197 25.9
HPP92_018536 Vanilla planifolia HOM05D000090 ORTHO05D000083 2.4e-06 56.2 193 29.5
Rhsim12G0147400 Rhododendron simsii HOM05D000090 ORTHO05D001322 3.1e-06 55.8 164 26.2
Lsat_1_v5_gn_2_92340 Lactuca sativa HOM05D000090 ORTHO05D000083 4.0e-06 55.5 195 25.6
Lj9A178G29 Lonicera japonica HOM05D000090 ORTHO05D000083 4.0e-06 55.5 175 28.0
Lj5C137T6 Lonicera japonica HOM05D000090 ORTHO05D001322 5.3e-06 55.1 201 25.9
QL05p083115 Quercus lobata HOM05D000090 ORTHO05D000083 5.3e-06 55.1 208 24.0
Rhsim12G0070100 Rhododendron simsii HOM05D000090 ORTHO05D001322 5.3e-06 55.1 199 27.1
THA.LOC104815858 Tarenaya hassleriana HOM05D000090 ORTHO05D001322 5.3e-06 55.1 163 28.8
PGR042G3750 Punica granatum HOM05D000090 ORTHO05D000083 6.9e-06 54.7 215 25.6
PGR142G1109 Punica granatum HOM05D000090 ORTHO05D000083 6.9e-06 54.7 182 29.1
Peaxi162Scf00017g02717 Petunia axillaris HOM05D000090 ORTHO05D000083 9.0e-06 54.3 197 23.4
Zm00001eb122610 Zea mays HOM05D000090 ORTHO05D000083 9.0e-06 54.3 199 26.1


User provided reference genes

Program Settings