Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 7.3e-116 420.6 220 100.0
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 3.7e-59 232.3 241 61.8
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.6e-49 199.5 224 58.9
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 7.7e-49 198.0 235 54.9
Zm00001eb245720 Zea mays HOM05D020767 ORTHO05D003885 4.8e-43 178.7 234 52.6
Zm00001eb138790 Zea mays HOM05D020767 ORTHO05D003885 1.6e-33 147.1 83 84.3
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 3.3e-15 86.3 194 37.1
HPP92_015769 Vanilla planifolia HOM05D020767 ORTHO05D003885 2.6e-12 76.6 111 45.0
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 5.8e-12 75.5 203 36.9
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.5e-12 75.1 225 32.4
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 3.7e-11 72.8 220 33.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-11 72.8 220 33.2
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.3e-11 71.6 220 32.7
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 8.3e-11 71.6 191 35.1
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.9e-10 70.5 203 33.5
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.4e-10 68.9 220 32.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 7.0e-10 68.6 212 32.1
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.0e-10 68.6 209 32.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.0e-10 68.6 209 32.1
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-09 67.8 209 31.6
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-09 67.8 209 31.6
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.6e-09 67.4 232 32.3
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.6e-09 67.4 182 35.7
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.7e-09 66.6 252 29.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.7e-09 66.6 197 36.0
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 3.5e-09 66.2 214 35.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.6e-09 65.9 189 33.3
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.6e-09 65.9 77 48.1
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 6.0e-09 65.5 196 35.2
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 6.0e-09 65.5 178 38.2
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 7.8e-09 65.1 214 31.3
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.0e-08 64.7 185 33.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.0e-08 64.7 205 34.6
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.0e-08 64.7 208 28.8
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-08 64.3 204 30.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.7e-08 63.9 176 33.5
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.3e-08 63.5 184 34.2
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.0e-08 63.2 189 33.9
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 3.0e-08 63.2 212 30.2
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.0e-08 63.2 154 35.7
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 3.9e-08 62.8 175 34.3
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 3.9e-08 62.8 224 33.5
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.9e-08 62.8 193 31.1
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 5.0e-08 62.4 225 29.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 6.6e-08 62.0 184 34.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 6.6e-08 62.0 207 31.9
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.6e-08 61.6 220 31.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 8.6e-08 61.6 185 32.4
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-07 61.2 178 33.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-07 61.2 180 35.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.5e-07 60.8 185 34.1
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.5e-07 60.8 174 34.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.5e-07 60.8 199 29.6
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.9e-07 60.5 222 31.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-07 60.5 202 31.7
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.5e-07 60.1 179 34.6
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.5e-07 60.1 181 33.1
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 3.3e-07 59.7 226 32.3
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.3e-07 59.7 182 35.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-07 59.7 182 38.5
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.3e-07 59.3 176 33.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 4.3e-07 59.3 183 32.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 5.6e-07 58.9 185 33.0
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.6e-07 58.9 175 32.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.6e-07 58.9 183 35.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 5.6e-07 58.9 225 29.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 5.6e-07 58.9 185 31.4
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 9.5e-07 58.2 181 33.1
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 9.5e-07 58.2 185 31.9
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 9.5e-07 58.2 166 31.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 9.5e-07 58.2 156 34.6
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 9.5e-07 58.2 181 32.0
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-06 57.8 159 36.5
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.2e-06 57.8 190 33.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.2e-06 57.8 218 31.7
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.2e-06 57.8 160 35.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.2e-06 57.8 164 35.4
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.6e-06 57.4 156 34.6
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.6e-06 57.4 218 31.2
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.1e-06 57.0 179 33.0
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.1e-06 57.0 173 32.4
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.1e-06 57.0 178 32.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.8e-06 56.6 153 34.6
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.8e-06 56.6 168 32.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.8e-06 56.6 168 32.1
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.6e-06 56.2 119 38.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.6e-06 56.2 225 28.4
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 4.7e-06 55.8 191 33.5
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 4.7e-06 55.8 208 31.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.7e-06 55.8 218 31.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.7e-06 55.8 164 34.8
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 4.7e-06 55.8 187 31.6
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 4.7e-06 55.8 181 34.3
ATR0605G284 Amborella trichopoda HOM05D020767 ORTHO05D003885 6.2e-06 55.5 40 65.0
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.2e-06 55.5 120 37.5
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 6.2e-06 55.5 160 33.8
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 6.2e-06 55.5 160 33.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 6.2e-06 55.5 170 34.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 6.2e-06 55.5 189 31.7
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 8.1e-06 55.1 158 34.2
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 8.1e-06 55.1 173 31.8
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 8.1e-06 55.1 196 29.6


User provided reference genes

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