Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 0.0e+00 1789.2 1009 100.0
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 1.8e-257 893.3 823 63.7
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 2.1e-162 577.4 1037 42.8
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 5.5e-158 562.8 1028 41.9
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 1.2e-157 561.6 1013 42.3
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 2.1e-157 560.8 1029 42.6
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 5.6e-155 552.7 997 42.6
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 2.1e-154 550.8 1013 41.5
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 3.7e-154 550.1 999 43.0
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 4.8e-154 549.7 982 42.9
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 2.6e-152 543.9 1007 42.8
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 2.6e-152 543.9 1135 39.6
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 7.6e-152 542.3 1000 42.1
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 3.8e-151 540.0 929 43.8
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 4.9e-151 539.7 1137 39.7
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.4e-150 538.1 1142 39.8
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 3.5e-149 533.5 1032 40.9
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 6.0e-149 532.7 1084 39.9
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 1.0e-148 531.9 1115 39.6
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 1.5e-147 528.1 989 41.9
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 1.5e-147 528.1 1159 39.2
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 3.3e-147 526.9 1086 40.0
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 4.3e-147 526.6 1081 40.1
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 2.8e-146 523.9 1151 38.8
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 4.8e-146 523.1 992 41.3
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 5.3e-145 519.6 956 43.2
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 1.5e-144 518.1 1151 38.5
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 5.0e-143 513.1 1296 35.9
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 1.4e-142 511.5 1150 38.3
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.9e-142 511.1 991 41.0
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 3.6e-141 506.9 1226 35.8
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 3.6e-141 506.9 1015 41.8
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 6.1e-141 506.1 1090 38.4
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 5.1e-140 503.1 968 41.2
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 6.7e-140 502.7 1115 37.7
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 8.8e-140 502.3 986 40.2
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 1.1e-139 501.9 1238 36.3
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 5.7e-139 499.6 1126 38.0
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 5.7e-139 499.6 1171 37.5
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 2.8e-138 497.3 931 41.5
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 4.8e-138 496.5 1219 37.2
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 1.4e-137 495.0 1123 37.8
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 2.4e-137 494.2 1274 36.2
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 3.1e-137 493.8 1204 37.3
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 2.0e-136 491.1 919 42.3
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 2.6e-136 490.7 1261 35.1
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 7.7e-136 489.2 1151 36.1
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 7.7e-136 489.2 1003 40.2
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 1.3e-135 488.4 1213 35.8
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 1.7e-135 488.0 998 40.7
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 2.2e-135 487.6 1124 36.7
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 5.0e-135 486.5 1285 34.7
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 1.1e-134 485.3 1205 35.4
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 1.9e-134 484.6 1152 36.6
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 3.2e-134 483.8 1123 37.7
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 3.6e-133 480.3 1139 37.1
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 4.7e-133 479.9 1281 34.3
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 6.1e-133 479.6 1139 37.0
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 1.1e-131 475.3 1209 36.7
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 3.3e-131 473.8 1003 39.5
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 3.3e-131 473.8 1173 36.1
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 3.3e-131 473.8 1245 35.7
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 6.3e-130 469.5 1200 35.9
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 8.2e-130 469.2 1264 34.4
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 8.2e-130 469.2 1182 35.4
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 8.2e-130 469.2 1287 34.0
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 9.1e-129 465.7 1222 35.5
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 1.5e-128 464.9 1122 36.1
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 2.0e-128 464.5 1223 34.6
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 5.0e-127 459.9 924 40.9
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 5.0e-127 459.9 1191 36.0
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 4.2e-126 456.8 1205 35.4
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 7.2e-126 456.1 1211 33.8
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 1.2e-125 455.3 1218 34.8
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 2.1e-125 454.5 1009 38.8
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 2.3e-124 451.1 1101 36.4
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 3.0e-124 450.7 1143 35.2
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 3.0e-124 450.7 1239 34.9
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 1.1e-123 448.7 1279 34.9
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 1.5e-123 448.4 1202 34.7
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 2.6e-123 447.6 1282 35.0
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 1.3e-122 445.3 1275 34.5
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 2.2e-122 444.5 1244 34.2
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 2.8e-122 444.1 1278 33.5
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 3.7e-122 443.7 1198 35.2
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 4.8e-122 443.4 1284 33.7
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 1.4e-121 441.8 1181 34.5
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 5.3e-121 439.9 1273 34.8
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 1.3e-119 435.3 1044 37.6
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 2.9e-119 434.1 1301 32.9
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.9e-118 431.4 821 41.9
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 4.2e-118 430.3 1219 32.8
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 1.5e-115 421.8 819 38.8
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 4.4e-115 420.2 966 37.7
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 9.7e-115 419.1 1042 37.6
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 2.8e-114 417.5 926 37.6
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 2.0e-112 411.4 910 37.7
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 5.9e-112 409.8 926 37.9
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 1.0e-111 409.1 1343 31.7
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 6.5e-111 406.4 1247 32.6
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 6.8e-108 396.4 639 44.6
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 6.1e-101 373.2 935 35.7
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.8e-92 345.1 515 45.4
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 7.5e-91 339.7 1024 31.6
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 9.8e-91 339.3 902 34.7
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.4e-89 335.5 1024 31.6
Cpa.g.c45157 Carica papaya HOM05D005126 ORTHO05D006169 6.2e-85 320.1 449 47.7
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 1.5e-83 315.5 1237 29.7
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.6e-80 305.4 535 42.1
HPP92_016843 Vanilla planifolia HOM05D005126 ORTHO05D006169 1.9e-78 298.5 441 45.8
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 4.7e-77 293.9 967 33.4
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 3.0e-71 274.6 1318 28.8
Zm00001eb411780 Zea mays HOM05D005126 ORTHO05D006169 1.1e-68 266.2 144 97.2
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 7.8e-64 250.0 439 40.8
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.3e-53 216.1 358 41.9
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 3.7e-45 188.0 1285 25.4
Prupe.4G011500 Prunus persica HOM05D005126 ORTHO05D006169 3.4e-43 181.4 518 34.7
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 1.9e-41 175.6 445 37.5
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 2.5e-38 165.2 399 36.6
arahy.Tifrunner.gnm1.ann1.TF7ZQX Arachis hypogaea HOM05D005126 ORTHO05D006169 9.0e-36 156.8 277 42.2
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 7.1e-33 147.1 435 34.5
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 2.3e-31 142.1 892 27.2
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 3.0e-31 141.7 233 47.6
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 5.7e-30 137.5 285 41.8
GSVIVG01002717001 Vitis vinifera HOM05D005126 ORTHO05D006169 6.9e-28 130.6 358 38.0
TAR626G0260 Trochodendron aralioides HOM05D005126 ORTHO05D006169 4.5e-27 127.9 168 54.2
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 6.5e-26 124.0 700 28.6
SHI02133 Sapria himalayana HOM05D005126 ORTHO05D006169 3.9e-23 114.8 269 34.2
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 1.1e-22 113.2 515 31.3
Atru.chr10.2050 Acer truncatum HOM05D005126 ORTHO05D006169 6.3e-21 107.5 131 51.1
Atru.chr10.2054 Acer truncatum HOM05D005126 ORTHO05D006169 1.4e-17 96.3 143 49.7
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.3e-14 85.1 269 33.8
Psat2g029640 Pisum sativum HOM05D005126 ORTHO05D006169 7.0e-12 77.4 89 53.9
Atru.chr10.2051 Acer truncatum HOM05D005126 ORTHO05D006169 4.5e-11 74.7 75 53.3
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 5.9e-11 74.3 403 31.5
FvH4_3g03071 Fragaria vesca HOM05D005126 ORTHO05D006169 3.6e-08 65.1 100 47.0
FAN25G1652 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.3e-07 62.4 58 65.5
Zm00001eb277090 Zea mays HOM05D005126 ORTHO05D006169 3.3e-06 58.5 64 57.8


User provided reference genes

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