Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb244610 Zea mays HOM05D007577 ORTHO05D002366 1.2e-89 333.2 167 100.0
Zm00001eb081390 Zea mays HOM05D007577 ORTHO05D002366 3.1e-18 95.9 68 66.2
Os04g0450000 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 8.5e-16 87.8 70 64.3
Os02g0568600 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 2.5e-15 86.3 51 70.6
Nn5g29944 Nelumbo nucifera HOM05D007577 ORTHO05D002366 1.6e-14 83.6 80 48.8
TAR625G1503 Trochodendron aralioides HOM05D007577 ORTHO05D002366 2.7e-14 82.8 55 61.8
Eucgr.F02125 Eucalyptus grandis HOM05D007577 ORTHO05D002366 4.7e-14 82.0 58 58.6
HPP92_016372 Vanilla planifolia HOM05D007577 ORTHO05D002366 8.0e-14 81.3 52 63.5
PGR042G1402 Punica granatum HOM05D007577 ORTHO05D002366 1.4e-13 80.5 67 52.2
PSO541G0756 Papaver somniferum HOM05D007577 ORTHO05D002366 2.3e-13 79.7 86 46.5
Ciclev10002010m.g Citrus clementina HOM05D007577 ORTHO05D002366 4.0e-13 79.0 66 53.0
Hma1.2p1_0620F.1_g190555 Hydrangea macrophylla HOM05D007577 ORTHO05D002366 4.0e-13 79.0 48 64.6
MSTRG.24626 Avicennia marina HOM05D007577 ORTHO05D002366 6.7e-13 78.2 79 48.1
RcHm_v2.0_Chr7g0237581 Rosa chinensis HOM05D007577 ORTHO05D002366 8.8e-13 77.8 64 54.7
Nn1g05500 Nelumbo nucifera HOM05D007577 ORTHO05D002366 1.2e-12 77.4 66 53.0
SalBow3G1297 Salvia bowleyana HOM05D007577 ORTHO05D002366 1.2e-12 77.4 63 52.4
Solyc04g076010.3 Solanum lycopersicum HOM05D007577 ORTHO05D002366 1.2e-12 77.4 54 57.4
Zm00001eb423710 Zea mays HOM05D003505 ORTHO05D002366 1.2e-12 77.4 57 64.9
Cc10_g15550 Coffea canephora HOM05D007577 ORTHO05D002366 2.0e-12 76.6 50 60.0
Nitab4.5_0001507g0070 Nicotiana tabacum HOM05D007577 ORTHO05D002366 2.0e-12 76.6 56 55.4
Dinv44835 Davidia involucrata HOM05D007577 ORTHO05D002366 2.6e-12 76.3 50 62.0
ECA247G1746 Erigeron canadensis HOM05D007577 ORTHO05D002366 3.3e-12 75.9 48 56.2
Peaxi162Scf00281g00079 Petunia axillaris HOM05D007577 ORTHO05D002366 3.3e-12 75.9 77 44.2
PGR031G3996 Punica granatum HOM05D007577 ORTHO05D002366 3.3e-12 75.9 120 39.2
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 3.3e-12 75.9 154 36.4
Haze_22347 Corylus avellana HOM05D007577 ORTHO05D002366 4.4e-12 75.5 67 50.7
Gorai.005G095300 Gossypium raimondii HOM05D007577 ORTHO05D002366 4.4e-12 75.5 58 55.2
QL09p017111 Quercus lobata HOM05D007577 ORTHO05D002366 4.4e-12 75.5 50 60.0
Hund27003 Selenicereus undatus HOM05D007577 ORTHO05D002366 4.4e-12 75.5 50 64.0
Potri.005G158400 Populus trichocarpa HOM05D007577 ORTHO05D002366 5.7e-12 75.1 65 53.8
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 5.7e-12 75.1 58 58.6
Aqoxy6G01467 Aquilegia oxysepala HOM05D007577 ORTHO05D002366 7.5e-12 74.7 60 56.7
FvH4_5g35850 Fragaria vesca HOM05D007577 ORTHO05D002366 7.5e-12 74.7 62 51.6
FAN08G0887 Fragaria x ananassa HOM05D007577 ORTHO05D002366 7.5e-12 74.7 62 51.6
FAN18G2443 Fragaria x ananassa HOM05D007577 ORTHO05D002366 7.5e-12 74.7 62 51.6
Lsat_1_v5_gn_1_2280 Lactuca sativa HOM05D007577 ORTHO05D002366 7.5e-12 74.7 76 42.1
Atru.chr13.1051 Acer truncatum HOM05D007577 ORTHO05D002366 9.7e-12 74.3 50 58.0
Manes.18G061400 Manihot esculenta HOM05D007577 ORTHO05D002366 9.7e-12 74.3 48 62.5
Sabra05G0120900 Salix brachista HOM05D007577 ORTHO05D002366 9.7e-12 74.3 56 55.4
MELO3C011066.2 Cucumis melo HOM05D007577 ORTHO05D002366 1.3e-11 73.9 50 60.0
Eucgr.F00405 Eucalyptus grandis HOM05D007577 ORTHO05D002366 1.3e-11 73.9 142 37.3
TAR376G0287 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.3e-11 73.9 72 50.0
Duzib041G0196 Durio zibethinus HOM05D007577 ORTHO05D002366 1.7e-11 73.6 58 53.4
CsaV3_2G030080 Cucumis sativus L. HOM05D007577 ORTHO05D002366 2.2e-11 73.2 48 60.4
CiPaw.08G053900 Carya illinoinensis HOM05D007577 ORTHO05D002366 2.8e-11 72.8 50 58.0
FAN04G3208 Fragaria x ananassa HOM05D007577 ORTHO05D002366 2.8e-11 72.8 62 48.4
Thecc.08G067500 Theobroma cacao HOM05D007577 ORTHO05D002366 2.8e-11 72.8 50 58.0
Zm00001eb244620 Zea mays HOM05D007577 ORTHO05D002366 2.8e-11 72.8 85 49.4
Duzib116G0880 Durio zibethinus HOM05D007577 ORTHO05D002366 3.7e-11 72.4 50 58.0
MBI06_g18795_MAGBIO Magnolia biondii HOM05D007577 ORTHO05D002366 3.7e-11 72.4 136 35.3
Os03g0187400 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 3.7e-11 72.4 50 60.0
Cpa.g.sc608.1 Carica papaya HOM05D007577 ORTHO05D002366 4.8e-11 72.0 48 62.5
Gohir.A05G221500 Gossypium hirsutum HOM05D007577 ORTHO05D002366 4.8e-11 72.0 64 50.0
Gorai.009G231700 Gossypium raimondii HOM05D007577 ORTHO05D002366 4.8e-11 72.0 64 50.0
Actinidia10365 Actinidia chinensis HOM05D007577 ORTHO05D002366 6.3e-11 71.6 124 35.5
Gohir.D02G084600 Gossypium hirsutum HOM05D007577 ORTHO05D002366 6.3e-11 71.6 58 53.4
MD15G1381100 Malus domestica HOM05D007577 ORTHO05D002366 6.3e-11 71.6 85 44.7
Duzib093G2023 Durio zibethinus HOM05D007577 ORTHO05D002366 8.2e-11 71.2 58 53.4
Migut.N00361 Erythranthe guttata HOM05D007577 ORTHO05D002366 8.2e-11 71.2 50 58.0
Sed0013944 Sechium edule HOM05D007577 ORTHO05D002366 8.2e-11 71.2 66 47.0
HPP92_002220 Vanilla planifolia HOM05D007577 ORTHO05D002366 8.2e-11 71.2 153 36.6
COL.COLO4_35193 Corchorus olitorius HOM05D007577 ORTHO05D002366 1.1e-10 70.9 56 53.6
HanXRQChr04g0108601 Helianthus annuus HOM05D007577 ORTHO05D002366 1.4e-10 70.5 78 44.9
MD08G1192700 Malus domestica HOM05D007577 ORTHO05D002366 1.4e-10 70.5 64 51.6
Sc26g0000220 Simmondsia chinensis HOM05D007577 ORTHO05D002366 1.4e-10 70.5 50 60.0
CANSAT25G2895 Cannabis sativa HOM05D007577 ORTHO05D002366 1.8e-10 70.1 56 51.8
Manes.02G147100 Manihot esculenta HOM05D007577 ORTHO05D002366 1.8e-10 70.1 134 36.6
Nitab4.5_0006922g0010 Nicotiana tabacum HOM05D007577 ORTHO05D002366 1.8e-10 70.1 46 60.9
Zm00001eb401520 Zea mays HOM05D007577 ORTHO05D002366 2.4e-10 69.7 124 38.7
Aqoxy5G01332 Aquilegia oxysepala HOM05D007945 ORTHO05D010049 4.1e-10 68.9 67 46.3
Lalb_Chr17g0344401 Lupinus albus HOM05D007577 ORTHO05D002366 5.3e-10 68.6 50 52.0
Glyma.14G179800 Glycine max HOM05D007577 ORTHO05D002366 7.0e-10 68.2 50 54.0
PSO675G7602 Papaver somniferum HOM05D007577 ORTHO05D002366 7.0e-10 68.2 89 42.7
Phvul.008G179400 Phaseolus vulgaris HOM05D007577 ORTHO05D002366 9.1e-10 67.8 50 54.0
Glyma.02G212100 Glycine max HOM05D007577 ORTHO05D002366 1.2e-09 67.4 50 54.0
LjContig00408g0001347 Lotus japonicus HOM05D007577 ORTHO05D002366 1.2e-09 67.4 50 54.0
Sed0009750 Sechium edule HOM05D007577 ORTHO05D002366 1.2e-09 67.4 48 56.2
Lalb_Chr10g0102661 Lupinus albus HOM05D007577 ORTHO05D002366 1.6e-09 67.0 54 48.1
Psat0s2495g0040 Pisum sativum HOM05D007577 ORTHO05D002366 1.6e-09 67.0 50 54.0
TWI12G1315 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 1.6e-09 67.0 133 37.6
arahy.Tifrunner.gnm1.ann1.15IZES Arachis hypogaea HOM05D007577 ORTHO05D002366 2.0e-09 66.6 71 45.1
arahy.Tifrunner.gnm1.ann1.MEQI9D Arachis hypogaea HOM05D007577 ORTHO05D002366 2.0e-09 66.6 71 45.1
Sc23g0000570 Simmondsia chinensis HOM05D007577 ORTHO05D002366 2.7e-09 66.2 123 35.0
Medtr5g065350 Medicago truncatula HOM05D007577 ORTHO05D002366 3.5e-09 65.9 95 36.8
Lj9A562T33 Lonicera japonica HOM05D003505 ORTHO05D002366 4.5e-09 65.5 117 35.0
TPR.G20891 Trifolium pratense HOM05D007577 ORTHO05D002366 4.5e-09 65.5 63 44.4
VMungo0647G2546 Vigna mungo HOM05D007577 ORTHO05D002366 5.9e-09 65.1 91 36.3
Lalb_Chr04g0253001 Lupinus albus HOM05D007577 ORTHO05D002366 7.7e-09 64.7 69 40.6
SMO274G0065 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 1.0e-08 64.3 67 50.7
Cpa.g.sc149.19 Carica papaya HOM05D003505 ORTHO05D002366 1.3e-08 63.9 87 39.1
vmacro21310 Vaccinium macrocarpon HOM05D007577 ORTHO05D002366 1.3e-08 63.9 164 35.4
ATR0022G018 Amborella trichopoda HOM05D007577 ORTHO05D002366 1.7e-08 63.5 141 31.9
MBI04_g09513_MAGBIO Magnolia biondii HOM05D003505 ORTHO05D002366 2.2e-08 63.2 116 34.5
Sed0026157 Sechium edule HOM05D003505 ORTHO05D002366 2.9e-08 62.8 57 49.1
Zm00001eb006590 Zea mays HOM05D007577 ORTHO05D002366 2.9e-08 62.8 119 36.1
Gohir.A02G077300 Gossypium hirsutum HOM05D007577 ORTHO05D002366 3.8e-08 62.4 139 32.4
Zm00001eb429690 Zea mays HOM05D003505 ORTHO05D002366 3.8e-08 62.4 68 47.1
Atru.chr5.213 Acer truncatum HOM05D003505 ORTHO05D002366 5.0e-08 62.0 135 36.3
Dinv44107 Davidia involucrata HOM05D003505 ORTHO05D002366 5.0e-08 62.0 73 39.7
Gohir.D05G224200 Gossypium hirsutum HOM05D007577 ORTHO05D002366 5.0e-08 62.0 129 33.3
FAN03G2272 Fragaria x ananassa HOM05D003505 ORTHO05D002366 8.5e-08 61.2 49 53.1
FAN03G3486 Fragaria x ananassa HOM05D003505 ORTHO05D002366 8.5e-08 61.2 49 53.1
FAN10G2627 Fragaria x ananassa HOM05D003505 ORTHO05D002366 8.5e-08 61.2 49 53.1
COL.COLO4_12464 Corchorus olitorius HOM05D003505 ORTHO05D002366 1.1e-07 60.8 125 36.0
Duzib138G0639 Durio zibethinus HOM05D003505 ORTHO05D002366 1.1e-07 60.8 87 40.2
FvH4_7g10710 Fragaria vesca HOM05D003505 ORTHO05D002366 1.1e-07 60.8 49 53.1
FAN01G1637 Fragaria x ananassa HOM05D003505 ORTHO05D002366 1.1e-07 60.8 49 53.1
FAN06G1069 Fragaria x ananassa HOM05D003505 ORTHO05D002366 1.1e-07 60.8 49 53.1
FAN06G2523 Fragaria x ananassa HOM05D003505 ORTHO05D002366 1.1e-07 60.8 49 53.1
Lj3g0023797 Lotus japonicus HOM05D003505 ORTHO05D002366 1.1e-07 60.8 111 37.8
SalBow5G3293 Salvia bowleyana HOM05D003505 ORTHO05D002366 1.1e-07 60.8 104 36.5
MSTRG.17152 Avicennia marina HOM05D003505 ORTHO05D002366 1.5e-07 60.5 48 54.2
CiPaw.14G024300 Carya illinoinensis HOM05D003505 ORTHO05D002366 1.5e-07 60.5 66 43.9
SGA_v2.0_scaffold52G19189 Striga asiatica HOM05D003505 ORTHO05D002366 1.9e-07 60.1 52 50.0
CANSAT21G1307 Cannabis sativa HOM05D003505 ORTHO05D002366 2.5e-07 59.7 122 34.4
Ciclev10022623m.g Citrus clementina HOM05D003505 ORTHO05D002366 2.5e-07 59.7 125 34.4
Potri.014G058300 Populus trichocarpa HOM05D003505 ORTHO05D002366 2.5e-07 59.7 48 52.1
Rhsim07G0032600 Rhododendron simsii HOM05D003505 ORTHO05D002366 2.5e-07 59.7 48 52.1
SEGI_40577 Sequoiadendron giganteum HOM05D007577 ORTHO05D002366 2.5e-07 59.7 49 51.0
Gohir.D07G153700 Gossypium hirsutum HOM05D003505 ORTHO05D002366 3.2e-07 59.3 48 52.1
Oeu009617.1 Olea europaea HOM05D003505 ORTHO05D002366 3.2e-07 59.3 104 33.7
Oeu009618.1 Olea europaea HOM05D003505 ORTHO05D002366 3.2e-07 59.3 104 33.7
PSO063G1028 Papaver somniferum HOM05D003505 ORTHO05D002366 3.2e-07 59.3 51 49.0
Prupe.2G135200 Prunus persica HOM05D003505 ORTHO05D002366 3.2e-07 59.3 85 41.2
SMO367G0729 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 3.2e-07 59.3 83 41.0
THA.LOC104814079 Tarenaya hassleriana HOM05D003505 ORTHO05D002366 3.2e-07 59.3 71 43.7
CSS0026198 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 4.2e-07 58.9 87 34.5
CSS0041341 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 4.2e-07 58.9 87 34.5
Eucgr.E01602 Eucalyptus grandis HOM05D003505 ORTHO05D002366 4.2e-07 58.9 125 36.0
Zm00001eb074720 Zea mays HOM05D003505 ORTHO05D002366 4.2e-07 58.9 124 39.5
CsaV3_3G007420 Cucumis sativus L. HOM05D003505 ORTHO05D002366 5.5e-07 58.5 48 45.8
BcaC07g42343 Brassica carinata HOM05D003505 ORTHO05D002366 7.2e-07 58.2 86 38.4
MELO3C005964.2 Cucumis melo HOM05D003505 ORTHO05D002366 7.2e-07 58.2 48 45.8
Eucgr.D02503 Eucalyptus grandis HOM05D003505 ORTHO05D002366 7.2e-07 58.2 49 49.0
Oeu000042.1 Olea europaea HOM05D003505 ORTHO05D002366 7.2e-07 58.2 117 35.9
TPR.G39106 Trifolium pratense HOM05D003505 ORTHO05D002366 7.2e-07 58.2 72 41.7
TWI56G0426 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 7.2e-07 58.2 125 33.6
Actinidia12174 Actinidia chinensis HOM05D003505 ORTHO05D002366 9.4e-07 57.8 48 50.0
CsaV3_6G009110 Cucumis sativus L. HOM05D003505 ORTHO05D002366 1.2e-06 57.4 124 34.7
Gohir.D12G098400 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.2e-06 57.4 66 40.9
Os04g0551600 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 1.2e-06 57.4 72 43.1
BraA09t42276Z Brassica rapa HOM05D003505 ORTHO05D002366 1.6e-06 57.0 48 52.1
ClCG05G000270 Citrullus lanatus HOM05D003505 ORTHO05D002366 1.6e-06 57.0 52 44.2
DCAR_031871 Daucus carota HOM05D003505 ORTHO05D002366 1.6e-06 57.0 61 42.6
Duzib133G1117 Durio zibethinus HOM05D003505 ORTHO05D002366 1.6e-06 57.0 87 39.1
Glyma.03G117800 Glycine max HOM05D003505 ORTHO05D002366 1.6e-06 57.0 89 39.3
Glyma.07G109200 Glycine max HOM05D003505 ORTHO05D002366 1.6e-06 57.0 87 37.9
Gohir.A08G137500 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.6e-06 57.0 110 30.9
Gorai.008G107200 Gossypium raimondii HOM05D003505 ORTHO05D002366 1.6e-06 57.0 66 40.9
TWI23G0353 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 1.6e-06 57.0 126 34.9
TAR374G1750 Trochodendron aralioides HOM05D003505 ORTHO05D002366 1.6e-06 57.0 48 50.0
HPP92_027433 Vanilla planifolia HOM05D003505 ORTHO05D002366 1.6e-06 57.0 123 34.1
CARHR000260 Cardamine hirsuta HOM05D003505 ORTHO05D002366 2.1e-06 56.6 48 52.1
Os02g0658200 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 2.1e-06 56.6 65 44.6
Psat4g209000 Pisum sativum HOM05D003505 ORTHO05D002366 2.1e-06 56.6 75 38.7
arahy.Tifrunner.gnm1.ann1.4HJ0IT Arachis hypogaea HOM05D003505 ORTHO05D002366 2.7e-06 56.2 48 50.0
BcaNung05014 Brassica carinata HOM05D003505 ORTHO05D002366 2.7e-06 56.2 48 52.1
C08p54050 Brassica napus HOM05D003505 ORTHO05D002366 2.7e-06 56.2 48 52.1
BolC8t52915H Brassica oleracea HOM05D003505 ORTHO05D002366 2.7e-06 56.2 48 52.1
Gohir.A12G095800 Gossypium hirsutum HOM05D003505 ORTHO05D002366 2.7e-06 56.2 66 42.4
MD07G1111800 Malus domestica HOM05D003505 ORTHO05D002366 2.7e-06 56.2 137 34.3
PSO832G0403 Papaver somniferum HOM05D003505 ORTHO05D002366 2.7e-06 56.2 129 31.0
SGA_v2.0_scaffold153G36953 Striga asiatica HOM05D003505 ORTHO05D002366 2.7e-06 56.2 48 52.1
Glyma.01G076200 Glycine max HOM05D003505 ORTHO05D002366 3.6e-06 55.8 75 40.0
Glyma.11G165291 Glycine max HOM05D003505 ORTHO05D002366 3.6e-06 55.8 48 50.0
Phvul.008G156800 Phaseolus vulgaris HOM05D003505 ORTHO05D002366 3.6e-06 55.8 48 50.0
Thecc.01G386300 Theobroma cacao HOM05D003505 ORTHO05D002366 3.6e-06 55.8 120 34.2
TWI59G1259 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 3.6e-06 55.8 127 32.3
Actinidia22774 Actinidia chinensis HOM05D003505 ORTHO05D002366 4.7e-06 55.5 48 47.9
Actinidia22828 Actinidia chinensis HOM05D003505 ORTHO05D002366 4.7e-06 55.5 48 47.9
CSS0005332 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 4.7e-06 55.5 123 33.3
CAN.G412.3 Capsicum annuum HOM05D003505 ORTHO05D002366 4.7e-06 55.5 123 33.3
HanXRQChr06g0168871 Helianthus annuus HOM05D003505 ORTHO05D002366 4.7e-06 55.5 113 32.7
VMungo1383G1044 Vigna mungo HOM05D003505 ORTHO05D002366 4.7e-06 55.5 73 41.1
HanXRQChr13g0422861 Helianthus annuus HOM05D003505 ORTHO05D002366 6.1e-06 55.1 48 47.9
Oeu051914.1 Olea europaea HOM05D003505 ORTHO05D002366 6.1e-06 55.1 121 35.5
Psat4g208960 Pisum sativum HOM05D003505 ORTHO05D002366 6.1e-06 55.1 74 36.5
QL04p035739 Quercus lobata HOM05D003505 ORTHO05D002366 6.1e-06 55.1 120 35.0
Sopen10g008430 Solanum pennellii HOM05D003505 ORTHO05D002366 6.1e-06 55.1 52 44.2
TPR.G28736 Trifolium pratense HOM05D003505 ORTHO05D002366 8.0e-06 54.7 48 47.9


User provided reference genes

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