Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 4.5e-101 371.3 194 100.0
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 2.1e-42 176.4 147 68.7
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 3.0e-20 102.8 133 46.6
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 2.5e-19 99.8 125 49.6
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 2.5e-19 99.8 125 49.6
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 7.3e-19 98.2 120 50.0
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 1.2e-18 97.4 137 42.3
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 1.2e-18 97.4 129 41.9
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 1.6e-18 97.1 119 47.1
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 1.6e-18 97.1 123 48.0
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 2.1e-18 96.7 150 43.3
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 4.7e-18 95.5 137 41.6
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 4.7e-18 95.5 141 41.8
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 8.1e-18 94.7 123 45.5
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 8.1e-18 94.7 123 44.7
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 8.1e-18 94.7 156 41.7
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 1.4e-17 94.0 119 45.4
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 1.8e-17 93.6 127 42.5
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 2.4e-17 93.2 123 44.7
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 2.4e-17 93.2 124 44.4
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 2.4e-17 93.2 125 46.4
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 2.4e-17 93.2 120 43.3
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 2.4e-17 93.2 125 43.2
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 3.1e-17 92.8 122 45.1
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 3.1e-17 92.8 138 43.5
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 4.0e-17 92.4 119 44.5
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 4.0e-17 92.4 119 44.5
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 4.0e-17 92.4 119 44.5
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 4.0e-17 92.4 119 44.5
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 5.2e-17 92.0 130 45.4
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 5.2e-17 92.0 133 42.1
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 6.9e-17 91.7 128 43.8
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 6.9e-17 91.7 126 42.1
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 6.9e-17 91.7 126 46.8
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 6.9e-17 91.7 126 46.8
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 6.9e-17 91.7 126 46.8
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 6.9e-17 91.7 152 43.4
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 8.9e-17 91.3 119 44.5
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 8.9e-17 91.3 119 46.2
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 1.2e-16 90.9 119 46.2
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 1.2e-16 90.9 158 39.2
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 1.2e-16 90.9 138 42.8
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 1.2e-16 90.9 127 43.3
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 1.2e-16 90.9 119 46.2
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 1.2e-16 90.9 119 46.2
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.5e-16 90.5 126 44.4
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 1.5e-16 90.5 119 44.5
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 1.5e-16 90.5 120 43.3
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 1.5e-16 90.5 126 43.7
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 2.0e-16 90.1 128 43.8
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 2.6e-16 89.7 119 44.5
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 2.6e-16 89.7 152 41.4
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 2.6e-16 89.7 123 43.1
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 3.4e-16 89.4 120 44.2
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 3.4e-16 89.4 123 42.3
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 3.4e-16 89.4 125 44.8
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 3.4e-16 89.4 131 42.0
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 4.4e-16 89.0 119 42.9
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 4.4e-16 89.0 126 45.2
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 5.8e-16 88.6 154 37.7
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 5.8e-16 88.6 123 43.9
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 5.8e-16 88.6 123 43.9
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 5.8e-16 88.6 140 39.3
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 7.6e-16 88.2 122 42.6
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 7.6e-16 88.2 131 41.2
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 9.9e-16 87.8 131 42.7
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 1.3e-15 87.4 133 42.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 1.7e-15 87.0 120 44.2
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 1.7e-15 87.0 131 42.7
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 2.2e-15 86.7 143 42.7
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 2.2e-15 86.7 128 45.3
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 2.2e-15 86.7 134 42.5
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 3.8e-15 85.9 127 42.5
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 3.8e-15 85.9 114 44.7
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 4.9e-15 85.5 124 42.7
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 4.9e-15 85.5 147 40.1
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 4.9e-15 85.5 125 41.6
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 4.9e-15 85.5 131 42.7
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 6.4e-15 85.1 130 42.3
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 6.4e-15 85.1 140 41.4
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 8.4e-15 84.7 125 40.0
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 8.4e-15 84.7 118 40.7
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 1.4e-14 84.0 132 41.7
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 5.4e-14 82.0 135 39.3
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 9.3e-14 81.3 120 42.5
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 2.7e-13 79.7 119 42.0
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 1.0e-12 77.8 119 35.3
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 5.1e-12 75.5 124 37.1
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 5.1e-12 75.5 114 40.4
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 6.6e-12 75.1 110 40.0
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 1.1e-11 74.3 127 37.8
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 4.3e-11 72.4 112 39.3
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 1.3e-10 70.9 138 36.2
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 1.6e-10 70.5 126 38.9
Mapoly0161s0025 Marchantia polymorpha HOM05D003443 ORTHO05D008640 6.2e-10 68.6 128 35.9
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 1.2e-08 64.3 66 48.5
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 1.5e-08 63.9 144 31.9
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 2.0e-08 63.5 98 41.8
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 2.6e-08 63.2 215 28.8
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 3.4e-08 62.8 67 47.8
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 9.9e-08 61.2 89 44.9
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 1.7e-07 60.5 227 25.1
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 2.9e-07 59.7 157 31.8


User provided reference genes

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