Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 0.0e+00 1176.0 590 100.0
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 3.8e-212 741.9 481 76.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.1e-174 617.5 571 56.2
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 7.1e-174 614.8 574 55.7
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.1e-173 613.2 573 54.8
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.5e-173 612.5 573 55.0
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 6.0e-173 611.7 573 55.5
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.7e-172 610.1 578 54.7
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.7e-172 610.1 573 55.1
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.0e-172 609.4 584 54.6
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.0e-172 609.4 575 55.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 5.1e-172 608.6 584 54.8
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.5e-171 606.3 578 54.5
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.5e-171 606.3 579 54.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 9.6e-171 604.4 574 54.5
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 9.6e-171 604.4 566 54.6
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.2e-170 604.0 585 54.2
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.1e-170 603.2 580 54.7
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.8e-170 602.8 575 54.8
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.6e-170 602.4 573 54.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.6e-170 602.4 573 54.6
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 6.2e-170 601.7 579 53.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.2e-170 601.7 571 54.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 8.1e-170 601.3 573 54.8
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 8.1e-170 601.3 599 53.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.4e-169 599.7 580 54.1
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.4e-169 599.7 581 54.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.1e-169 599.4 575 55.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.2e-169 598.6 599 53.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.9e-169 597.8 574 54.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.2e-168 597.4 572 54.5
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-168 597.4 570 54.6
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.0e-168 596.7 577 54.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.0e-168 596.7 595 53.1
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.4e-168 595.9 573 54.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.4e-168 595.5 573 54.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.4e-168 595.5 581 53.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.4e-168 595.5 561 54.4
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.4e-168 595.5 576 53.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 5.8e-168 595.1 575 54.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.8e-168 595.1 573 54.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.6e-168 594.7 513 57.7
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.7e-167 593.6 584 53.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.2e-167 593.2 577 53.9
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-167 592.8 579 53.5
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.9e-167 592.8 573 54.3
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.8e-167 592.4 588 53.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.9e-167 592.0 581 52.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.9e-167 592.0 575 54.3
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 6.4e-167 591.7 590 52.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.2e-166 589.3 577 54.1
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.2e-166 589.3 577 54.1
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 4.2e-166 589.0 575 53.6
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.2e-166 589.0 577 53.9
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.2e-166 589.0 584 52.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.4e-166 588.6 576 54.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 5.4e-166 588.6 573 53.9
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.1e-166 588.2 570 54.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 9.3e-166 587.8 572 53.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.2e-165 587.4 548 55.8
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.2e-165 587.4 570 54.4
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.1e-165 586.6 584 52.7
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.1e-165 586.6 571 54.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.7e-165 586.3 567 54.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.5e-165 585.9 606 52.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.6e-165 585.5 580 53.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.0e-165 585.1 575 53.6
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 7.8e-165 584.7 574 53.7
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.7e-164 583.6 582 52.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.7e-164 583.6 572 54.4
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.3e-164 583.2 584 52.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 6.6e-164 581.6 576 53.3
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 8.7e-164 581.3 582 52.4
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 8.7e-164 581.3 573 53.2
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.3e-163 579.3 575 52.9
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.3e-163 578.9 584 52.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.6e-162 575.9 579 52.2
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.1e-162 574.7 584 52.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.4e-161 573.2 582 52.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.9e-161 571.6 579 52.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 9.0e-161 571.2 581 53.2
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 9.0e-161 571.2 572 53.1
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.5e-160 570.5 580 53.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.0e-160 570.1 571 52.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.3e-159 567.4 538 54.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.7e-159 567.0 566 53.2
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-159 567.0 579 52.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.8e-159 565.8 568 52.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 6.4e-159 565.1 570 51.6
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.4e-159 564.7 589 51.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.1e-158 564.3 581 53.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-158 563.9 588 50.9
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.4e-158 563.1 587 50.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.4e-158 563.1 571 51.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.2e-158 562.8 568 51.6
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 7.1e-158 561.6 650 47.7
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 9.3e-158 561.2 548 53.3
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 9.3e-158 561.2 573 52.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-157 560.8 583 51.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.6e-157 560.5 575 51.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 2.1e-157 560.1 568 51.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 2.1e-157 560.1 568 51.2
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.9e-157 558.1 583 51.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 7.9e-157 558.1 585 50.1
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.8e-156 557.0 599 49.7
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.3e-156 556.6 563 52.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-156 556.2 585 50.4
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.1e-156 555.4 579 50.8
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 5.1e-156 555.4 579 50.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-155 553.9 558 52.3
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.5e-155 553.1 533 52.5
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.5e-155 553.1 533 52.5
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.5e-155 553.1 597 49.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.3e-155 552.7 571 51.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 5.6e-155 552.0 566 51.2
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 7.4e-155 551.6 507 55.4
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 7.4e-155 551.6 579 50.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.8e-154 549.7 579 50.4
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.8e-154 549.7 579 50.4
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 9.9e-152 541.2 604 49.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.9e-151 538.9 557 50.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.1e-150 535.0 585 49.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.1e-149 533.5 506 55.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.7e-149 533.1 565 50.8
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.5e-149 532.7 518 51.5
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.1e-148 528.9 518 53.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.5e-147 527.3 518 51.2
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 7.4e-147 525.0 488 54.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-146 524.2 526 52.5
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.2e-146 521.5 526 50.2
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.8e-145 520.4 517 54.5
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.3e-143 514.2 557 51.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-143 514.2 527 49.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.2e-143 513.5 515 51.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.2e-142 509.2 564 47.5
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.5e-142 508.8 570 49.6
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-141 506.5 525 48.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.6e-141 505.8 468 55.3
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.5e-139 500.0 423 58.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.3e-137 492.3 537 50.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.0e-136 490.3 408 59.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.9e-135 486.5 409 60.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.5e-135 485.3 547 46.3
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 8.5e-135 485.0 411 59.1
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.9e-132 476.1 523 48.4
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.3e-122 444.5 573 44.7
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-113 414.8 366 56.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.2e-108 396.0 519 44.9
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.3e-106 389.0 437 50.1
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 8.3e-98 362.1 464 44.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.7e-82 310.1 316 53.5
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.1e-76 290.4 310 52.3
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.5e-72 276.9 321 48.3
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.7e-47 194.9 153 64.7
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.3e-47 194.5 153 64.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 7.1e-33 146.4 163 48.5
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 5.1e-31 140.2 160 46.2
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.3e-30 137.5 160 45.6
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 7.4e-30 136.3 163 46.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 7.9e-24 116.3 125 50.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.5e-19 102.1 95 53.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.9e-19 100.1 289 31.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.9e-19 100.1 309 29.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-16 91.7 183 38.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.1e-16 90.1 153 37.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.9e-15 87.4 60 71.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.7e-13 82.0 132 37.9
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.8e-13 81.3 82 48.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-11 74.7 82 45.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-10 72.8 117 38.5
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 6.7e-07 60.1 87 42.5


User provided reference genes

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