Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb243670 Zea mays HOM05D036183 ORTHO05D010901 1.3e-88 329.7 168 100.0
Zm00001eb252520 Zea mays HOM05D004043 ORTHO05D002193 1.7e-40 169.9 166 58.4
Zm00001eb398480 Zea mays HOM05D000023 ORTHO05D010901 4.2e-39 165.2 164 53.0
Zm00001eb349030 Zea mays HOM05D000023 ORTHO05D000014 6.8e-29 131.3 138 45.7
Zm00001eb221320 Zea mays HOM05D036183 ORTHO05D010901 4.4e-20 102.1 91 49.5
Nn2g14207 Nelumbo nucifera HOM05D048985 ORTHO05D010901 8.0e-14 81.3 75 41.3
Dinv18131 Davidia involucrata HOM05D000022 ORTHO05D010901 3.0e-13 79.3 91 35.2
Zm00001eb311710 Zea mays HOM05D036183 ORTHO05D010901 2.0e-09 66.6 56 71.4
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-08 63.2 108 31.5
Dinv32095 Davidia involucrata HOM05D009083 ORTHO05D011928 3.0e-08 62.8 76 40.8
Dinv02991 Davidia involucrata HOM05D009083 ORTHO05D011928 3.9e-08 62.4 76 40.8
Dinv06593 Davidia involucrata HOM05D009083 ORTHO05D011928 3.9e-08 62.4 76 40.8
Dinv18192 Davidia involucrata HOM05D009083 ORTHO05D011928 3.9e-08 62.4 84 41.7
Zm00001eb072070 Zea mays HOM05D038492 ORTHO05D010901 6.6e-08 61.6 80 42.5
Dinv08694 Davidia involucrata HOM05D009083 ORTHO05D011928 8.6e-08 61.2 76 40.8
Dinv24563 Davidia involucrata HOM05D009083 ORTHO05D011928 8.6e-08 61.2 76 40.8
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 1.1e-07 60.8 107 32.7
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 1.5e-07 60.5 79 38.0
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 1.5e-07 60.5 97 34.0
Dinv36737 Davidia involucrata HOM05D009083 ORTHO05D011928 2.5e-07 59.7 76 39.5
SHI03890 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-07 59.7 64 42.2
THA.LOC104820419 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 4.3e-07 58.9 98 29.6
Atru.chr10.1210 Acer truncatum HOM05D000023 ORTHO05D009195 5.6e-07 58.5 54 44.4
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 5.6e-07 58.5 76 42.1
MELO3C006750.2 Cucumis melo HOM05D000023 ORTHO05D000014 5.6e-07 58.5 76 42.1
CsaV3_3G015520 Cucumis sativus L. HOM05D000023 ORTHO05D000014 5.6e-07 58.5 76 42.1
Dinv12371 Davidia involucrata HOM05D009083 ORTHO05D011928 5.6e-07 58.5 76 38.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.3e-07 58.2 74 39.2
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 7.3e-07 58.2 102 38.2
Sed0003236 Sechium edule HOM05D000023 ORTHO05D000014 7.3e-07 58.2 76 42.1
Dinv19539 Davidia involucrata HOM05D009083 ORTHO05D011928 9.5e-07 57.8 94 36.2
Prupe.1G105600 Prunus persica HOM05D000023 ORTHO05D000014 2.1e-06 56.6 76 40.8
Atru.chr9.374 Acer truncatum HOM05D000023 ORTHO05D000014 2.8e-06 56.2 70 34.3
Aqoxy5G02793 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 2.8e-06 56.2 76 40.8
EL10Ac8g19642 Beta vulgaris HOM05D000023 ORTHO05D000014 2.8e-06 56.2 77 36.4
HanXRQChr07g0186221 Helianthus annuus HOM05D000023 ORTHO05D000014 2.8e-06 56.2 123 29.3
QL11p007092 Quercus lobata HOM05D000412 ORTHO05D000429 2.8e-06 56.2 69 34.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 2.8e-06 56.2 70 35.7
Thecc.04G312700 Theobroma cacao HOM05D000023 ORTHO05D000014 2.8e-06 56.2 99 37.4
arahy.Tifrunner.gnm1.ann1.GKHQ6E Arachis hypogaea HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
arahy.Tifrunner.gnm1.ann1.W645MI Arachis hypogaea HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
CSS0008819 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
Cc03_g00140 Coffea canephora HOM05D000023 ORTHO05D000014 3.6e-06 55.8 106 34.9
Dinv18021 Davidia involucrata HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
Hma1.2p1_0013F.1_g007920 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
Lj6g0007513 Lotus japonicus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 39.5
Rhsim04G0165800 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
Hund00853 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 66 42.4
Hund04216 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 81 38.3
Hund09860 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 81 38.3
Hund15138 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 67 40.3
Hund30522 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.8 67 40.3
VMungo1309G1890 Vigna mungo HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
GSVIVG01017686001 Vitis vinifera HOM05D000023 ORTHO05D000014 3.6e-06 55.8 76 40.8
MSTRG.10183 Avicennia marina HOM05D000023 ORTHO05D000014 4.7e-06 55.5 76 40.8
Lj8P661T5 Lonicera japonica HOM05D000023 ORTHO05D002750 4.7e-06 55.5 97 32.0
MBI19_g32734_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 4.7e-06 55.5 76 39.5
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 4.7e-06 55.5 92 33.7
Atru.chr4.3145 Acer truncatum HOM05D000023 ORTHO05D000014 6.2e-06 55.1 77 36.4
Atru.chr8.31 Acer truncatum HOM05D000023 ORTHO05D000014 6.2e-06 55.1 54 42.6
CiPaw.01G129600 Carya illinoinensis HOM05D000023 ORTHO05D000014 6.2e-06 55.1 77 39.0
CDE06G2340 Ceratophyllum demersum HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 39.5
FvH4_4g21491 Fragaria vesca HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 40.8
Lj2C491G6 Lonicera japonica HOM05D000023 ORTHO05D002750 6.2e-06 55.1 97 32.0
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 40.8
Nitab4.5_0000098g0210 Nicotiana tabacum HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 39.5
QL06p014182 Quercus lobata HOM05D000023 ORTHO05D000014 6.2e-06 55.1 106 36.8
RcHm_v2.0_Chr4g0427461 Rosa chinensis HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 40.8
Hund13497 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.2e-06 55.1 67 40.3
Hund19738 Selenicereus undatus HOM05D000023 ORTHO05D003407 6.2e-06 55.1 61 47.5
SGA_v2.0_scaffold64G22025 Striga asiatica HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 39.5
TPR.G24695 Trifolium pratense HOM05D000023 ORTHO05D000014 6.2e-06 55.1 76 39.5
Zm00001eb220690 Zea mays HOM05D000023 ORTHO05D000014 6.2e-06 55.1 127 31.5
Ca_02356_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 8.0e-06 54.7 76 39.5
COL.COLO4_04752 Corchorus olitorius HOM05D008981 ORTHO05D009195 8.0e-06 54.7 108 31.5
Glyma.09G079100 Glycine max HOM05D000023 ORTHO05D000014 8.0e-06 54.7 76 39.5
Lj1P332T15 Lonicera japonica HOM05D000023 ORTHO05D000014 8.0e-06 54.7 97 32.0
Lj6P498T15 Lonicera japonica HOM05D000023 ORTHO05D002750 8.0e-06 54.7 97 32.0
Manes.01G233700 Manihot esculenta HOM05D000023 ORTHO05D000014 8.0e-06 54.7 65 46.2
Oeu022707.2 Olea europaea HOM05D000023 ORTHO05D000014 8.0e-06 54.7 76 39.5
Potri.002G188400 Populus trichocarpa HOM05D000023 ORTHO05D000014 8.0e-06 54.7 71 43.7
SHI21514 Sapria himalayana HOM05D000023 ORTHO05D000014 8.0e-06 54.7 64 37.5
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 8.0e-06 54.7 60 38.3
Hund00488 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.0e-06 54.7 81 34.6
Hund01377 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.0e-06 54.7 81 38.3
Hund08340 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.0e-06 54.7 92 35.9
Hund23957 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.0e-06 54.7 67 40.3


User provided reference genes

Program Settings