Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 9.1e-54 213.4 113 100.0
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 2.8e-31 138.7 91 84.6
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 5.9e-21 104.4 78 69.2
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 2.4e-14 82.4 76 60.5
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 2.4e-14 82.4 69 60.9
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 4.1e-14 81.6 71 62.0
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 1.2e-13 80.1 76 57.9
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 2.7e-13 79.0 63 65.1
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 2.7e-13 79.0 71 62.0
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 4.6e-13 78.2 76 57.9
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 6.0e-13 77.8 59 69.5
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 7.8e-13 77.4 69 60.9
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 7.8e-13 77.4 81 54.3
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 1.3e-12 76.6 64 60.9
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 1.7e-12 76.3 65 56.9
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 3.0e-12 75.5 67 62.7
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 3.9e-12 75.1 68 58.8
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 8.6e-12 73.9 68 57.4
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 8.6e-12 73.9 64 62.5
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 8.6e-12 73.9 63 61.9
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.1e-11 73.6 66 53.0
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 1.9e-11 72.8 63 60.3
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 2.5e-11 72.4 62 59.7
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 2.5e-11 72.4 62 62.9
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 3.3e-11 72.0 62 64.5
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 4.3e-11 71.6 62 58.1
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 7.3e-11 70.9 67 59.7
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 7.3e-11 70.9 63 60.3
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 7.3e-11 70.9 66 60.6
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 9.5e-11 70.5 66 57.6
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 9.5e-11 70.5 65 53.8
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.2e-10 70.1 72 55.6
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.6e-10 69.7 61 62.3
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 2.1e-10 69.3 72 55.6
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 2.8e-10 68.9 63 61.9
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.6e-10 68.6 68 57.4
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 4.7e-10 68.2 72 56.9
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 8.1e-10 67.4 67 56.7
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 8.1e-10 67.4 67 59.7
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 1.1e-09 67.0 64 59.4
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 1.1e-09 67.0 63 54.0
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 1.4e-09 66.6 64 59.4
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 1.4e-09 66.6 64 56.2
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 1.4e-09 66.6 67 56.7
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.4e-09 66.6 59 61.0
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 1.8e-09 66.2 56 67.9
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 1.8e-09 66.2 54 63.0
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 1.8e-09 66.2 61 62.3
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 1.8e-09 66.2 65 58.5
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 1.8e-09 66.2 63 57.1
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 3.1e-09 65.5 59 61.0
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 3.1e-09 65.5 59 61.0
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 4.0e-09 65.1 61 60.7
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 5.2e-09 64.7 65 56.9
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 5.2e-09 64.7 65 56.9
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 5.2e-09 64.7 61 59.0
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 5.2e-09 64.7 69 55.1
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 5.2e-09 64.7 63 58.7
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 6.8e-09 64.3 64 53.1
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 6.8e-09 64.3 64 53.1
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 1.2e-08 63.5 69 50.7
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 1.2e-08 63.5 64 50.0
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 1.2e-08 63.5 65 56.9
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.5e-08 63.2 67 56.7
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 7.5e-08 60.8 65 52.3
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 7.5e-08 60.8 51 62.7
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 4.1e-06 55.1 41 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 9.2e-06 53.9 74 39.2


User provided reference genes

Program Settings