Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 5.1e-61 237.7 129 100.0
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 5.1e-61 237.7 129 100.0
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 5.1e-61 237.7 129 100.0
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 5.1e-61 237.7 129 100.0
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 3.7e-59 231.5 127 98.4
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 2.7e-54 215.3 119 97.5
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 2.2e-48 195.7 110 96.4
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 2.9e-48 195.3 127 81.1
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.1e-42 176.8 105 91.4
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 3.0e-29 132.1 127 52.8
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 8.8e-29 130.6 127 57.5
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 3.4e-28 128.6 127 51.2
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 5.7e-28 127.9 127 49.6
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 4.9e-27 124.8 127 48.0
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 8.3e-27 124.0 127 49.6
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.1e-26 123.6 127 50.4
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.1e-26 123.6 127 50.4
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 1.8e-26 122.9 127 49.6
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 4.1e-26 121.7 126 50.0
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 4.1e-26 121.7 127 49.6
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 4.1e-26 121.7 127 50.4
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 5.4e-26 121.3 127 49.6
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 5.4e-26 121.3 127 49.6
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 9.2e-26 120.6 129 48.1
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 1.6e-25 119.8 127 52.0
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 2.7e-25 119.0 127 49.6
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.5e-25 118.2 127 47.2
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 5.9e-25 117.9 127 47.2
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 7.8e-25 117.5 127 48.0
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 1.3e-24 116.7 127 48.8
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 1.7e-24 116.3 127 48.0
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.3e-24 115.9 127 48.0
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.0e-24 114.8 127 48.0
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.1e-23 113.6 127 47.2
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.1e-23 113.6 119 49.6
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.5e-23 113.2 127 48.8
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 1.9e-23 112.8 127 48.8
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.9e-23 112.8 122 48.4
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.9e-23 112.8 127 47.2
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 1.9e-23 112.8 127 47.2
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 2.5e-23 112.5 127 47.2
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 2.5e-23 112.5 127 47.2
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 2.5e-23 112.5 127 46.5
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.3e-23 111.7 127 47.2
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 4.3e-23 111.7 127 47.2
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 5.6e-23 111.3 127 45.7
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 5.6e-23 111.3 127 47.2
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 5.6e-23 111.3 127 48.0
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 7.3e-23 110.9 127 45.7
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 7.3e-23 110.9 127 50.4
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 9.5e-23 110.5 127 46.5
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 9.5e-23 110.5 124 48.4
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 1.2e-22 110.2 127 47.2
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.6e-22 109.8 127 46.5
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 1.6e-22 109.8 127 45.7
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 3.6e-22 108.6 127 45.7
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 8.0e-22 107.5 129 45.7
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 8.0e-22 107.5 127 47.2
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 8.0e-22 107.5 127 44.9
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 8.0e-22 107.5 127 46.5
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 1.0e-21 107.1 127 47.2
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 1.0e-21 107.1 127 45.7
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.4e-21 106.7 127 47.2
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 1.4e-21 106.7 126 46.0
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.8e-21 106.3 127 43.3
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 1.8e-21 106.3 127 49.6
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.8e-21 106.3 125 46.4
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.3e-21 105.9 125 45.6
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 3.0e-21 105.5 127 44.9
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 3.0e-21 105.5 127 44.1
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 3.0e-21 105.5 127 42.5
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 3.0e-21 105.5 127 46.5
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 5.2e-21 104.8 127 48.8
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 6.8e-21 104.4 127 48.8
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 8.9e-21 104.0 127 48.8
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 8.9e-21 104.0 127 48.8
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 8.9e-21 104.0 127 48.8
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 1.5e-20 103.2 127 44.9
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.5e-20 103.2 127 44.9
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 1.5e-20 103.2 127 45.7
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.5e-20 103.2 127 44.1
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 2.6e-20 102.4 127 43.3
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 2.6e-20 102.4 127 48.8
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 2.6e-20 102.4 127 44.1
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 2.6e-20 102.4 127 43.3
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 3.4e-20 102.1 127 48.0
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.4e-20 102.1 75 68.0
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 7.5e-20 100.9 129 44.2
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 7.5e-20 100.9 127 44.9
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 7.5e-20 100.9 125 44.8
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 1.3e-19 100.1 127 44.9
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 1.3e-19 100.1 127 43.3
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 2.2e-19 99.4 121 43.0
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 3.7e-19 98.6 127 45.7
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 3.7e-19 98.6 129 41.9
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 4.9e-19 98.2 76 69.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 6.4e-19 97.8 127 46.5
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 8.3e-19 97.4 127 45.7
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 1.1e-18 97.1 118 44.1
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.1e-18 97.1 127 45.7
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 2.4e-18 95.9 127 44.1
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 3.2e-18 95.5 127 44.1
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 1.2e-17 93.6 127 44.1
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 1.2e-17 93.6 118 44.1
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 1.2e-17 93.6 109 42.2
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 2.0e-17 92.8 128 42.2
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 2.7e-17 92.4 127 40.9
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 5.9e-17 91.3 122 41.8
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 1.0e-16 90.5 127 40.9
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 1.3e-16 90.1 118 42.4
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.7e-16 89.7 127 40.2
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 1.9e-15 86.3 123 43.9
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 7.3e-15 84.3 115 41.7
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 2.3e-13 79.3 127 40.2
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 3.4e-12 75.5 127 37.8
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 3.2e-10 68.9 59 62.7
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 3.5e-09 65.5 59 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 2.3e-08 62.8 86 40.7
Zm00001eb345920 Zea mays HOM05D003167 ORTHO05D023710 3.9e-08 62.0 69 56.5
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 6.6e-08 61.2 100 39.0
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.9e-07 59.7 65 53.8
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 2.5e-07 59.3 60 55.0
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 3.3e-07 58.9 71 47.9
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 2.1e-06 56.2 42 69.0
Prupe.5G050900 Prunus persica HOM05D004897 ORTHO05D005928 3.6e-06 55.5 43 62.8


User provided reference genes

Program Settings