Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb242480 Zea mays HOM05D000123 ORTHO05D000064 7.6e-161 570.5 292 100.0
Os02g0527300 Oryza sativa ssp. japonica HOM05D000123 ORTHO05D000064 1.7e-104 383.3 286 70.6
Ciclev10011531m.g Citrus clementina HOM05D000123 ORTHO05D000064 1.0e-16 91.7 305 31.5
Solyc09g009100.4 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.4e-13 80.5 266 29.7
Sopen09g003810 Solanum pennellii HOM05D000123 ORTHO05D000064 5.3e-13 79.3 268 29.1
MD14G1015900 Malus domestica HOM05D000123 ORTHO05D000064 1.5e-12 77.8 235 31.9
PGSC0003DMG401002683 Solanum tuberosum HOM05D000123 ORTHO05D000064 4.5e-12 76.3 236 32.6
MBI17_g01041_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 2.9e-11 73.6 286 29.7
Glyma.13G151200 Glycine max HOM05D000123 ORTHO05D000064 6.5e-11 72.4 254 29.5
CSS0012317 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 8.5e-11 72.0 181 30.9
ATR0820G264 Amborella trichopoda HOM05D000123 ORTHO05D000064 1.1e-10 71.6 295 28.1
FAN02G2247 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.1e-10 71.6 234 33.8
FAN09G3311 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.1e-10 71.6 233 34.3
ClCG10G019360 Citrullus lanatus HOM05D000123 ORTHO05D000064 2.5e-10 70.5 59 57.6
Haze_19537 Corylus avellana HOM05D000123 ORTHO05D000064 2.5e-10 70.5 69 56.5
FvH4_6g17890 Fragaria vesca HOM05D000123 ORTHO05D000064 2.5e-10 70.5 234 34.2
Phvul.007G223401 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 3.2e-10 70.1 63 58.7
FAN14G1783 Fragaria x ananassa HOM05D000123 ORTHO05D000064 4.2e-10 69.7 234 33.8
FAN05G4576 Fragaria x ananassa HOM05D000123 ORTHO05D000064 7.2e-10 68.9 236 33.1
FAN05G5362 Fragaria x ananassa HOM05D000123 ORTHO05D000064 7.2e-10 68.9 236 33.5
QL07p040557 Quercus lobata HOM05D000123 ORTHO05D000064 9.3e-10 68.6 246 30.1
Sabra06G0090500 Salix brachista HOM05D000123 ORTHO05D000064 9.3e-10 68.6 234 30.3
CsaV3_3G036820 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.2e-09 68.2 301 30.2
Nn2g14000 Nelumbo nucifera HOM05D000123 ORTHO05D000064 1.2e-09 68.2 270 28.5
Glyma.10G066100 Glycine max HOM05D000123 ORTHO05D000064 1.6e-09 67.8 257 30.0
Manes.09G059028 Manihot esculenta HOM05D000123 ORTHO05D000064 1.6e-09 67.8 177 30.5
Potri.006G115700 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.6e-09 67.8 245 29.4
Cfa016372 Carpinus fangiana HOM05D000123 ORTHO05D000064 2.1e-09 67.4 69 55.1
Gohir.D09G137600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.7e-09 67.0 56 57.1
Gorai.006G158000 Gossypium raimondii HOM05D000123 ORTHO05D000064 2.7e-09 67.0 56 57.1
Lj2E129T4 Lonicera japonica HOM05D000123 ORTHO05D000064 2.7e-09 67.0 116 43.1
Nitab4.5_0000663g0110 Nicotiana tabacum HOM05D000123 ORTHO05D000064 2.7e-09 67.0 264 25.8
PGR004G2837 Punica granatum HOM05D000123 ORTHO05D000064 2.7e-09 67.0 195 31.3
COL.COLO4_29816 Corchorus olitorius HOM05D000123 ORTHO05D000064 3.6e-09 66.6 292 29.5
VMungo0720G0657 Vigna mungo HOM05D000123 ORTHO05D000064 4.6e-09 66.2 288 25.7
Aqoxy1G00936 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 6.1e-09 65.9 270 29.6
arahy.Tifrunner.gnm1.ann1.7QKH3M Arachis hypogaea HOM05D000123 ORTHO05D000064 6.1e-09 65.9 163 32.5
arahy.Tifrunner.gnm1.ann1.YFKM11 Arachis hypogaea HOM05D000123 ORTHO05D000064 6.1e-09 65.9 163 32.5
TWI77G0809 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 6.1e-09 65.9 178 35.4
Peaxi162Scf00433g00411 Petunia axillaris HOM05D000123 ORTHO05D000064 7.9e-09 65.5 271 28.0
Sed0011925 Sechium edule HOM05D000123 ORTHO05D000064 7.9e-09 65.5 59 55.9
CAN.G824.29 Capsicum annuum HOM05D000123 ORTHO05D000064 1.0e-08 65.1 69 50.7
MELO3C027079.2 Cucumis melo HOM05D000123 ORTHO05D000064 1.0e-08 65.1 283 29.3
Gohir.A09G135700 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.0e-08 65.1 235 29.8
Actinidia11334 Actinidia chinensis HOM05D000123 ORTHO05D000064 1.3e-08 64.7 278 26.3
Nitab4.5_0006360g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.3e-08 64.7 264 26.5
Psat6g078240 Pisum sativum HOM05D000123 ORTHO05D000064 1.3e-08 64.7 126 34.1
CiPaw.10G005300 Carya illinoinensis HOM05D000123 ORTHO05D000064 1.8e-08 64.3 177 33.9
Hund04071 Selenicereus undatus HOM05D000123 ORTHO05D000064 1.8e-08 64.3 62 51.6
Duzib093G0099 Durio zibethinus HOM05D000123 ORTHO05D000064 2.3e-08 63.9 283 30.0
Prupe.7G117200 Prunus persica HOM05D000123 ORTHO05D000064 3.0e-08 63.5 182 35.2
Cc06_g05260 Coffea canephora HOM05D000123 ORTHO05D000064 3.9e-08 63.2 121 36.4
Lj5g0020966 Lotus japonicus HOM05D000123 ORTHO05D000064 3.9e-08 63.2 179 31.8
SalBow5G3509 Salvia bowleyana HOM05D000123 ORTHO05D000064 5.1e-08 62.8 69 49.3
Medtr1g061170 Medicago truncatula HOM05D000123 ORTHO05D000064 6.7e-08 62.4 177 31.1
RcHm_v2.0_Chr3g0472141 Rosa chinensis HOM05D000123 ORTHO05D000064 6.7e-08 62.4 55 56.4
TPR.G5688 Trifolium pratense HOM05D000123 ORTHO05D000064 1.1e-07 61.6 173 28.9
Lalb_Chr02g0155151 Lupinus albus HOM05D000123 ORTHO05D000064 1.5e-07 61.2 230 28.3
GSVIVG01033781001 Vitis vinifera HOM05D000123 ORTHO05D000064 1.5e-07 61.2 89 41.6
Atru.chr8.1635 Acer truncatum HOM05D000123 ORTHO05D000064 1.9e-07 60.8 308 26.9
SGA_v2.0_scaffold184G39923 Striga asiatica HOM05D000123 ORTHO05D000064 1.9e-07 60.8 269 29.4
TAR633G0777 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.9e-07 60.8 267 29.6
ECA248G2453 Erigeron canadensis HOM05D000123 ORTHO05D000064 2.5e-07 60.5 74 47.3
Sc20g0006030 Simmondsia chinensis HOM05D000123 ORTHO05D000064 2.5e-07 60.5 55 50.9
THA.LOC104816373 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 3.3e-07 60.1 134 34.3
Manes.08G020700 Manihot esculenta HOM05D000123 ORTHO05D000064 4.3e-07 59.7 246 24.8
THA.LOC104826933 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 9.7e-07 58.5 69 46.4
TWI53G0606 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 9.7e-07 58.5 179 30.2
TWI74G1412 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 1.3e-06 58.2 179 30.2
vmacro07361 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.3e-06 58.2 116 35.3
AUR62033579 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.6e-06 57.8 137 32.1
MD12G1017900 Malus domestica HOM05D000123 ORTHO05D000064 2.8e-06 57.0 231 30.3
Ah.15g091110 Amaranthus hybridus HOM05D000123 ORTHO05D000064 4.8e-06 56.2 99 39.4
A10p32380 Brassica napus HOM05D000123 ORTHO05D000064 4.8e-06 56.2 61 49.2
BraA10t45278Z Brassica rapa HOM05D000123 ORTHO05D000064 4.8e-06 56.2 61 49.2
Dinv21258 Davidia involucrata HOM05D000123 ORTHO05D000064 6.3e-06 55.8 240 28.3
HPP92_023067 Vanilla planifolia HOM05D000123 ORTHO05D000064 6.3e-06 55.8 55 54.5
Oeu033119.2 Olea europaea HOM05D000123 ORTHO05D000064 8.2e-06 55.5 239 29.7
Rhsim03G0081300 Rhododendron simsii HOM05D000123 ORTHO05D000064 8.2e-06 55.5 176 29.0


User provided reference genes

Program Settings